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mmu_circAtad5_2055
Basic information of circular RNA
PanCircBase ID:
mmu_circAtad5_2055
mm39_Chr. Position ID:
chr11|80003574|80024132|+
Gene name:
Atad5
Transcript:
ENSMUST00000017694.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
12,13,14,15,16,17,18,19,20,21
Exon/intron offsets:
0,326,1407,6216,6718,7933,11318,14508,18455,19716
Genomic length:
20558
Exon/intron sizes in nt:
89,14,01,51,17,71,37,90,00,00,00,00,000
Flanking exon/introns:
chr11:80002397-80003574|chr11:80024132-80024854
Splice length:
2055
Other database IDs:
CIRCpedia: MMU_CIRCpedia_30359, circAtlas: mmu-Atad5_0026
Human Ortholog IDs:
Mature spliced Sequence:
TTGGTTGAAGGACTGGAAAAGAAGAGCTGAACTGGAAGAAAGACATAATTTGAAAGGAAAGAGAGATGAAAAAGAGGAAGGTATTTTGGATTTATCGGATAGCACGGACTTTAAAGGCAGTTCAGATGATGAAGAGAATCGTCTTTGCAACACTGTTCTTATAACAGGACCAACGGGAGTGGGAAAAACTGCTGCCGTGTATGCTTGTGCTCAGGAGCTTGGGTTTAAGATATTTGAAGTGAATGCCTCTTCACAGCGAAGTGGTAGGCAAATCCTGTCTCAGCTGAAGGAAGCTACCCAGTCCCATCAAGTAGATAAGCAAGGTGTAAACTCACAAAAACCCTGTTTCTTTAACAACTACAACATTGGCAAGTCACCAAAAAAGTTAAACTCCCCGGGGAAAGTTGTTACATCACCAAGGAAGCTTCCTCCATCGTCACCAAAGACAAGTGGGCAGAAGCGAGCACTTCTTCCTAAAACTTTGGCAAATTACTTTAAAGTGTCCTCCAAATCCAAAAGTAATGACGACGTAGGAGCACTCATGGGAGATGACAAAGGAGTCAAAAATTCGTCTTTGGAACAGAGGCAACTTATTCAGACTAAATCAACCAATGCAAATAATTCACATATTAAAGATGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGACATCACTCATTCTCTTTGAGGAGGTTGATGTCATTTTTGATGAAGATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAGTGATCCCACATTTAGTCTAGTGTTTGATGGCTGCTTTGAAGAAATCAATTTCAGTATTCCTTCCCTGCTAAATGTTGCCAGCTATCTACAAGTGATTTGTCTAGTTGAGAATTTCAGAACTGACTTTAAAGACTTTGTAACCTTGTTGACTGCAAATGCTTGTGACATCAGAAAAAGTATCCTTTACTTACAGTTTTGGATTAGAAGTGGAGGTGGAATTTTAGAAGAAAGGCCATTATCACACTGTCGAGAAAATAGCAGAAATACACTGGTTTGTTCAGAAGATGGCTCTGATGCAAACATCAACTCTAAAAAACCCAAAAGGAACCGTGTGGCCCTCCCCAGGTGTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCATTATTGAAGCACAAGATCACAACAAAGGAAGAATGGCAGAAACTCATTCAGGTTCTCACCGAATTCCACGTGCAAAATATCGATCTGCTACATAGTAACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGTAAGGGGTGCTTATGGCTTCCCAGTGACTACACAGGCCAGTGCACCAGCAAGCATGGGGCATCTTACCAGGAAGCAGTCAAAAGACCAGCCATTGAGAAAGTCACAGAAAAGGAAACAGAAAAAGATGGTGATCCTAGATGACAGTGACCTGTTTGACACTGGCCTAGACTTTTCTGGTGAACTGCCTAGCCTATCTCCTGCACCCTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGGTTTCAAGCCCCACTCTGTACCTCAGCCCCCTAAGACACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCTCAGTGAGTTCATGGAGAACATGTCCTTCATAGATGCTCTTTTAACAGATCCAGGGGAACAGAATGAATTGGGTAGAAGTGCCTTTCACTGGACAAATGGAAGGGTTAAAAGTGGACTTTGTGATGAGTTTAGTCTTGAGAATAGAGACAGGTGGGCTCCTCAGAGCGCTGGAGAATTAAAAGCAACTGCAGAAGCACTGAGCTTTACTGAGTGTTCTTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGTGTTTCACAAAGGCGC
59.62
ACCTTCCTCTTTTTCATCTCTCT
56.9
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGTGTTTCACAAAGGCGC
59.62
ACCTTCCTCTTTTTCATCTCTCTT
57.55
140
PCR template sequence:
CATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGATTGGTTGAAGGACTGGAAAAGAAGAGCTGAACTGGAAGAAAGACATAATTTGAAAGGAAAGAGAGATGAAAAAGAGGAAGGTATTTTGGATTTATCGGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(2), mmu-miR-544-5p(2), mmu-miR-223-3p(1), mmu-miR-33-5p(1), mmu-miR-217-5p(1), mmu-miR-203-3p(1), mmu-miR-495-3p(1), mmu-miR-411-3p(1), mmu-miR-690(1), mmu-miR-335-3p(1), mmu-miR-3087-3p(1), mmu-miR-350-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGCTAATCTAGATTGGTTGAAGGAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCATAD5_2055_ORF_1
0.7773
0.053245508
1
3567
ORF sequence:
ATGGGAGATGACAAAGGAGTCAAAAATTCGTCTTTGGAACAGAGGCAACTTATTCAGACTAAATCAACCAATGCAAATAATTCACATATTAAAGATGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGACATCACTCATTCTCTTTGAGGAGGTTGATGTCATTTTTGATGAAGATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAGTGATCCCACATTTAGTCTAGTGTTTGATGGCTGCTTTGAAGAAATCAATTTCAGTATTCCTTCCCTGCTAAATGTTGCCAGCTATCTACAAGTGATTTGTCTAGTTGAGAATTTCAGAACTGACTTTAAAGACTTTGTAACCTTGTTGACTGCAAATGCTTGTGACATCAGAAAAAGTATCCTTTACTTACAGTTTTGGATTAGAAGTGGAGGTGGAATTTTAGAAGAAAGGCCATTATCACACTGTCGAGAAAATAGCAGAAATACACTGGTTTGTTCAGAAGATGGCTCTGATGCAAACATCAACTCTAAAAAACCCAAAAGGAACCGTGTGGCCCTCCCCAGGTGTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCATTATTGAAGCACAAGATCACAACAAAGGAAGAATGGCAGAAACTCATTCAGGTTCTCACCGAATTCCACGTGCAAAATATCGATCTGCTACATAGTAACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGTAAGGGGTGCTTATGGCTTCCCAGTGACTACACAGGCCAGTGCACCAGCAAGCATGGGGCATCTTACCAGGAAGCAGTCAAAAGACCAGCCATTGAGAAAGTCACAGAAAAGGAAACAGAAAAAGATGGTGATCCTAGATGACAGTGACCTGTTTGACACTGGCCTAGACTTTTCTGGTGAACTGCCTAGCCTATCTCCTGCACCCTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGGTTTCAAGCCCCACTCTGTACCTCAGCCCCCTAAGACACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCTCAGTGAGTTCATGGAGAACATGTCCTTCATAGATGCTCTTTTAACAGATCCAGGGGAACAGAATGAATTGGGTAGAAGTGCCTTTCACTGGACAAATGGAAGGGTTAAAAGTGGACTTTGTGATGAGTTTAGTCTTGAGAATAGAGACAGGTGGGCTCCTCAGAGCGCTGGAGAATTAAAAGCAACTGCAGAAGCACTGAGCTTTACTGAGTGTTCTTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGATTGGTTGAAGGACTGGAAAAGAAGAGCTGAACTGGAAGAAAGACATAATTTGAAAGGAAAGAGAGATGAAAAAGAGGAAGGTATTTTGGATTTATCGGATAGCACGGACTTTAAAGGCAGTTCAGATGATGAAGAGAATCGTCTTTGCAACACTGTTCTTATAACAGGACCAACGGGAGTGGGAAAAACTGCTGCCGTGTATGCTTGTGCTCAGGAGCTTGGGTTTAAGATATTTGAAGTGAATGCCTCTTCACAGCGAAGTGGTAGGCAAATCCTGTCTCAGCTGAAGGAAGCTACCCAGTCCCATCAAGTAGATAAGCAAGGTGTAAACTCACAAAAACCCTGTTTCTTTAACAACTACAACATTGGCAAGTCACCAAAAAAGTTAAACTCCCCGGGGAAAGTTGTTACATCACCAAGGAAGCTTCCTCCATCGTCACCAAAGACAAGTGGGCAGAAGCGAGCACTTCTTCCTAAAACTTTGGCAAATTACTTTAAAGTGTCCTCCAAATCCAAAAGTAATGACGACGTAGGAGCACTCATGGGAGATGACAAAGGAGTCAAAAATTCGTCTTTGGAACAGAGGCAACTTATTCAGACTAAATCAACCAATGCAAATAATTCACATATTAAAGATGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGACATCACTCATTCTCTTTGAGGAGGTTGATGTCATTTTTGATGAAGATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAGTGATCCCACATTTAGTCTAGTGTTTGATGGCTGCTTTGAAGAAATCAATTTCAGTATTCCTTCCCTGCTAAATGTTGCCAGCTATCTACAAGTGATTTGTCTAGTTGAGAATTTCAGAACTGACTTTAAAGACTTTGTAACCTTGTTGACTGCAAATGCTTGTGACATCAGAAAAAGTATCCTTTACTTACAGTTTTGGATTAGAAGTGGAGGTGGAATTTTAGAAGAAAGGCCATTATCACACTGTCGAGAAAATAGCAGAAATACACTGGTTTGTTCAGAAGATGGCTCTGATGCAAACATCAACTCTAAAAAACCCAAAAGGAACCGTGTGGCCCTCCCCAGGTGTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCATTATTGAAGCACAAGATCACAACAAAGGAAGAATGGCAGAAACTCATTCAGGTTCTCACCGAATTCCACGTGCAAAATATCGATCTGCTACATAGTAACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGTAAGGGGTGCTTATGGCTTCCCAGTGACTACACAGGCCAGTGCACCAGCAAGCATGGGGCATCTTACCAGGAAGCAGTCAAAAGACCAGCCATTGAGAAAGTCACAGAAAAGGAAACAGAAAAAGATGGTGATCCTAGATGACAGTGACCTGTTTGACACTGGCCTAGACTTTTCTGGTGAACTGCCTAGCCTATCTCCTGCACCCTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGGTTTCAAGCCCCACTCTGTACCTCAGCCCCCTAAGACACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCTCAGTGAGTTCATGGAGAACATGTCCTTCATAGATGCTCTTTTAACAGATCCAGGGGAACAGAATGAATTGGGTAGAAGTGCCTTTCACTGGACAAATGGAAGGGTTAAAAGTGGACTTTGTGATGAGTTTAGTCTTGAGAATAGAGACAGGTGGGCTCCTCAGAGCGCTGGAGAATTAAAAGCAACTGCAGAAGCACTGAGCTTTACTGAGTGTTCTTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTA
Peptide sequence:
MGDDKGVKNSSLEQRQLIQTKSTNANNSHIKDVGAEESNRKKATSLILFEEVDVIFDEDAGFLNAVKTFMATTKRPVILTTSDPTFSLVFDGCFEEINFSIPSLLNVASYLQVICLVENFRTDFKDFVTLLTANACDIRKSILYLQFWIRSGGGILEERPLSHCRENSRNTLVCSEDGSDANINSKKPKRNRVALPRCDTGCAEALFGLKNIASPSQDLLSLLKHKITTKEEWQKLIQVLTEFHVQNIDLLHSNLEVILPLPVHVVPDVRGAYGFPVTTQASAPASMGHLTRKQSKDQPLRKSQKRKQKKMVILDDSDLFDTGLDFSGELPSLSPAPSLSVEDNIRRDSNPEIKTQNSGFKPHSVPQPPKTLAEKKCCMLVSHCLNSLSEFMENMSFIDALLTDPGEQNELGRSAFHWTNGRVKSGLCDEFSLENRDRWAPQSAGELKATAEALSFTECSSTISKALESLNSCKQLERDPTNELTVCVSQRRHDACFRQSAANLDWLKDWKRRAELEERHNLKGKRDEKEEGILDLSDSTDFKGSSDDEENRLCNTVLITGPTGVGKTAAVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNNYNIGKSPKKLNSPGKVVTSPRKLPPSSPKTSGQKRALLPKTLANYFKVSSKSKSNDDVGALMGDDKGVKNSSLEQRQLIQTKSTNANNSHIKDVGAEESNRKKATSLILFEEVDVIFDEDAGFLNAVKTFMATTKRPVILTTSDPTFSLVFDGCFEEINFSIPSLLNVASYLQVICLVENFRTDFKDFVTLLTANACDIRKSILYLQFWIRSGGGILEERPLSHCRENSRNTLVCSEDGSDANINSKKPKRNRVALPRCDTGCAEALFGLKNIASPSQDLLSLLKHKITTKEEWQKLIQVLTEFHVQNIDLLHSNLEVILPLPVHVVPDVRGAYGFPVTTQASAPASMGHLTRKQSKDQPLRKSQKRKQKKMVILDDSDLFDTGLDFSGELPSLSPAPSLSVEDNIRRDSNPEIKTQNSGFKPHSVPQPPKTLAEKKCCMLVSHCLNSLSEFMENMSFIDALLTDPGEQNELGRSAFHWTNGRVKSGLCDEFSLENRDRWAPQSAGELKATAEALSFTECSSTISKALESLNSCKQLERDPTNELTVCVSQRRHDACFRQSAANL
IRESfinder result
IRESfinder score
0.698314123
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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