top of page
mmu_circAtad1_51
Basic information of circular RNA
PanCircBase ID:
mmu_circAtad1_51
mm39_Chr. Position ID:
chr19|32661401|32661452|-
Gene name:
Atad1
Transcript:
ENSMUST00000235412.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
51
Exon/intron sizes in nt:
51
Flanking exon/introns:
chr19:32654250-32661401|chr19:32661452-32664632
Splice length:
51
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCTCTAAAACAAAGAGAAGCAATTTTAAAGCTCATCTTGAAAAATGAAAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
AAAGCTCATCTTGAAAAATGAAAATGCTCTAAAACAAAGAGAAGCAATTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAAAATGAAAATGCTCTAAAACAAA
siRNA sets
TTTGTTTTAGAGCATTTTC, TTGTTTTAGAGCATTTTCA, TTTAGAGCATTTTCATTTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.782153397
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page