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mmu_circAsh1l_5177
Basic information of circular RNA
PanCircBase ID:
mmu_circAsh1l_5177
mm39_Chr. Position ID:
chr3|88873118|88909181|+
Gene name:
Ash1l
Transcript:
ENSMUST00000186583.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,15421,35961
Genomic length:
36063
Exon/intron sizes in nt:
5,17,45,58,102
Flanking exon/introns:
chr3:88858302-88873118|chr3:88909181-88914448
Splice length:
5177
Other database IDs:
CIRCpedia: MMU_CIRCpedia_33252, circAtlas: mmu-Ash1l_0014
circBase: hsa_circ_0014589, circAtlas: hsa-ASH1L_0009, CIRCpedia: HSA_CIRCpedia_179937
Human Ortholog IDs:
Mature spliced Sequence:
GGAAAGAGATGCTGGTTGCAAGTTTTGGAAAACCCTATTTTTTTATGGAACAGTGTTCTGTAAAAGTTTTGTAAGATCCCTTGGCAATAACACACTTGTGATGGACCCTAGGAATACTGCTATGTTAGGATTGGGTTCTGATTCCGAAGGATTTTCAAGAAAGAGTCCTTCTACCATCAATCCTGGCACTCTGGCCAGCAAAAGAGAAGCAGAGATAGAGGGTGCCACAGAAGAAGAGGATCCTCGCAAGCGGAATCGAGAAAGGGGCACAGAAGCAGGAAAGGAGGATGGCTCGACGGATGCACAGCAACAGTTTTCAGTGAAAGAAACAAACTTTTCAGAGGGAAACTTAAAATTGAAAATTGGCCTTCAGGCAAAGAGAACTAAAAAGCCTCCAAAGAACTTGGAGAACTATGTGTGTCGACCTGCCATAAAGACAACCATCAAGCACTCAAGGAAAGCACTTAAAAGTGGGAAGATGACAGATGAGAAGAATGAGCACTGCCCTTCAAAATGGGACTCTTCAAAATTGTTCAAGAAAGCAGGTGACGCTACAGCCATCGACTGCCAAGCCGAAGAAAGCATCCATCTTCATTCACAGGGGGAAAGTAATCCTTTGTCTAAGAAGCTTTCTCCAGTACATTCACAAATGGCAGATTACATTAGTGCAGCACCATCTCTTGTTGGCAGTCGAGATCCTGATATAAAGGACAGAGCATTACTTAATGGAGGAACTAGTGTAACAGAAAAGTTGGCACAGCTCATTGCTACCTGTCCTCCTTCCAAGTCTTCCAAGGCAAAACCGAAGAAGTTAGGAACTGGCACTACAGTTGGATTGGTTAGCAAGGACTTGATCAGGAAACCAGGTGTTGGCTCTATAGCTGGAATAATTCATAAAGACTTAATTAAAAAGCCAGCTCTTAGCACAGCAGTTGGGTTGGTAACTAAAGATCCAGGGAAAAAGCCTATGTTCAATGCAGCAGTAGGCCTGATCAATAAGGACTCTGTGAAAAAATTGGGAACTGGCACTACAGCCGTATTCATTAATAAAGACTTAGGCAAAAAGCCAGGGGCTATCACTACAGTTGGACTGCTGAGCAAAGAATCAGGAAAGAAGCTAGGCATTGGTATTGTTCCAGGGCTAGTGAATAAAGAGTCTGGCAAGAAATTAGGACTTGGCACCGTAGTTGGACTGGTTAATAAAGAGTTGGGAAAGAAACTGAGTTCTACAGTTGGCCTAGTGGCCAAGGATGTTACGAAGAAGATTGTAGCAAGCTCAGCAATGGGATTGGTTAATAAGGACATTGGAAAGAAATTATTAAATTGTCCTATGGCAGGACAACTGGGCAGTAAAGATGCCTTAAACCTTAAATCTGAAGCACTGCTCCCCACTCAGGAACAACTTAAGGCTTCCTGTAGTGCAAACATAAGTAATCATGACAGTCAAGAACTTCCTGAGTCTCTGAAAGACAGTGCTACCGGCAAAGCTTTTGAGAAGAGTGTTATGCGGCATAGTAAAGAAAGCATGTTGGAAAAATTTTCAGTCCGAAAAGAAATTACTAATTTGGAGAAAGAAATGTTTAATGAAGGAACATGCATTCAGCAAGACAATTTCTCATCTAGTGAAAGGGGAGCCTTTGAAACCTCAAAACATGAAAAGCAGCCTCCTGTGTATTGCACTTCTCCTGACTTTCAAATAGGAGGTGCCTCTGATGCCTCTACAGCTAAATCTCCCTTCAGTGCAGTAGGCGAAAGCAACCTTCCTTCCTCGTCACCTACTGTATCTGTTAATCCTGTAACCAGGAGTCCCCCTGAAGCTTCTTCACAGTTGGTTCCAAACCCATTACTTTTAAATTCTACAGCAGAACAAATGGAAGAAATCTCTGAATCTATTGGAAAGAGCCAGTTTACTGCTGAAAGTACCCACTTGAATGTTGGTCACAGATCATTAGGTCATAGCTTAAGTATTGAGTGTAAAGGAATTGATAAAGAACTAAATGAATCAAAAAATACACATCTAGATATTCCTAGAATAAGTTCTTCCTTGGGAAAAAAGCCAAGTTTGACTTCTGACTCTGGTATTCATGCAATTACTCCTTCCGTTGTTAATTTTACTAGTTTGTTTAGTAACAAACCTTTTTTAAAGCTTGGTGCAGTCACTGCACCAGACAAACACTGCCAGGTTGCTGAAAGCCTAAGCTCGAGTTTCCAGTCCAAACCATTGAAAAAAAGAAAAGGAAGAAAACCTCGGTGGACTAAAGTGGTGGCAAGAAGCACATGCCGGTCTCCAAAAGGACTAGACTTAGAAAGATCAGAGCTTTTTAAGAATGTTTCTTGTAGCTCACTATCAAATAGTTCTGAGCCAGCGAAGTTTATGAAAACTATCGGAGCATCATCATTCGTCGATCATGACTTCCTTAAACGCCGATTGCCAAAGTTGAGTAAGTCTTCAGCTCCATCTCTTGCTCTTTTAACCGACAGCGAGAAACCATCTCATAAGTCTTTTATTACTCACAAACTGTCCTCCAGTATGTGTGTCACTAGCGATCTTTTGTCGGATATTTATAAGCCCAAGAGAGGAAGACCTAAATCCAAGGAAATGCCTCAGCTAGAAGGTCCACCTAAAAGGACTTTAAAAATACCTGCCTCTAAAGTTTTTTCTTTACAGTCTAAAGAAGAGCAAGAACCCCCAATTTTACAACCAGAAATTGAAATTCCTTCCTTCAAGCAAAGTTTGTCTGTATCTCCTTTTCCAAAAAAAAGAGGCAGGCCTAAGAGGCAGATGAGGTCTCCAGTGAAGATGAAACCCCCTGTCCTGTCAGTGGCTCCATTTGTTGCCACTGAAAGTCCAAGTAAGCTCGAGTCTGAAAGTGAGAACCATAGAAGTAGCAGTGACTTTTTTGAGAGTGAGGACCAGCTTCAGGACACAGACGACTTAGATGACAGTCACAGGCAAAGTGTCTGTAGTATGAGTGACCTTGAGATGGAACCAGATAAAAAAATTAGCAAGCGAAACAATGGACAATTAATGAAAACAATTATCCGAAAAATAAATAAAATGAAGACTTTAAAGAGAAAAAAACTGTTGAATCAGATTCTTTCGAGTTCTGTAGAATCAAGTAATAAAGGAAAAGTGCAGTCCAAGCTTCACAATACAGTCTCAAGTCTTGCTGCCACATTTGGCTCTAAATTGGGGCAACAAATCAATGTCAGCAAGAAAGGAACCATTTACATAGGGAAGAGAAGGGGGCGGAAACCAAAAACCGTCTTAAATGGCCTGCTTTCTGGTAGCCCTGCCAGCCTTGCTGTGCTTGAACAAACAGCTCAGCAGGCAGCTGGGTCAGCATTAGGACAGATCCTCCCCCCTTTACTGCCATCACCTGCTAGTAGCTCTGAGATCCTTCCATCACCTATTTGCTCTCAGTCTTCTGGGACTAGTGGAGGTCAGAGCCCTGTTAGTAGTGACGCAGGCTTTGTTGAACCTAGCTCAGTGCCATATTTGCATGTGCACTCCAGACAGGGCAGTATGATTCAGACTCTTGCAATGAAGAAGGCTTCCAAGGGCAGAAGGCGGCTCTCTCCTCCTACTTTGTTGCCAAATTCTCCTTCTCATTTGAGTGAACTCACATCCCTGAAAGAAGCCACTCCTTCCCCAGTTAGTGAGTCTCATAGTGACGAGACCATTCCCAGTGACAGTGGCATTGGGACAGATAATAATAGCACATCAGACAGGGCAGAGAAGTTTTGTGGACAGAAAAAGAGGAGACATTCTTTTGAGCACATTTCTCTGATTCCCCCTGAAACTTCTACCGTCCTAAACAGTCTCAAAGAAAAACACAAACACAAATGTAAGCGCAGGAGTCACGATTACCTCAGCTATGACAAGATGAAAAGACAGAAGCGAAAACGGAAAAAGAAATATCCCCAGCTTCGAAATAGGCAGGATCCAGACTTCATCGCAGAACTAGAGGAGCTGATAAGTCGTCTAAGTGAGATTCGGATCACCCATCGAAGCCATCATTTTATTCCCCGAGACCTCCTGCCAACTATTTTTCGAATCAACTTTAATAGTTTCTATACACATCCTTCTTTTCCCTTAGACCCATTGCACTACATTCGGAAACCTGACTTAAAAAAGAAACGAGGGAGGCCCCCTAAGATGAGGGAGGCAATGGCAGAAATGCCTTTTATGCACAGCCTTAGTTTTCCTTTATCTAGTACTGGATTTTATCCTTCTTATGGCATGCCTTACTCTCCCTCACCCCTTACAGCTGCTCCAATAGGATTAGGGTATTATGGAAGGTATCCCCCCACTCTTTATCCACCGCCACCATCTCCTTCATTCACCACTCCACTGCCACCTCCCTCCTATATGCATGCTGGTCATTTATTGCTCAATCCTACCAAATATCATAAGAAAAAGCATAAGCTGCTTAGACAGGAGGCTTTTCTTACAACCAGCAGGACCCCTCTCCTTTCCATGAGCACCTACCCCAGCGTACCTCCAGAGATGGCTTATGGTTGGATGGTGGAGCACAAACACAGACACCGTCACAAACACAGAGAGCACCGTTCTGAACAGCCCCAGGTTTCCATGGATAGTGGCTCTTCCAGATCCGTCTTGGAGTCTTTGAAACGTTACCGATTTGGTAAGGATACTGTTGGAGATCGATATAAGCATAAGGAAAAGCACAGGTGTCACATGTCCTGCCCTCATCTCTCTCCTTCAAAGAACTTAATAAACAGAGAAGAACAGTGGGTTTCTCGAGAGCCTTCAGAATCAAGTTCTTTAGCCTTGGGATTGCAAACACCTTTACAAATTGACTGCTCAGAAAGTTCTCCCAGTTTGTCCCTTGGAGGATTTACTCCCAATTCTGAGCCAGCCAGCAGTGATGAACATATGAACCTTTTTACAAGTGCAATAGGCAGCTGCAGAGTTTCAAACCCTAACTCCAGTTGCCGGAAGAAATTAACTGACAGCCCTGGGCTCTTTCCTGTACAAGATACTGCACTAAATCGGCCTCACAGAAAGGAACCATTACCTTCCAGTGAAAGGGCAATACAGTCGTTGGCAGGTTCCCAGTCAGCTTCCGATAAACCTTCCCAGCGATCATCAGAAAGCACAAATTGTAGCCCTACTCGTAAAAGGTCTTCATCTGAGAGTACTTCTTCAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTTCCCAGCGATCATCAG
59.53
ACAAGTGTGTTATTGCCAAGGG
59.37
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCTTCCCAGCGATCATCAG
59.53
CAAGTGTGTTATTGCCAAGGGA
59.11
178
PCR template sequence:
TCCCAGTCAGCTTCCGATAAACCTTCCCAGCGATCATCAGAAAGCACAAATTGTAGCCCTACTCGTAAAAGGTCTTCATCTGAGAGTACTTCTTCAACAGGGAAAGAGATGCTGGTTGCAAGTTTTGGAAAACCCTATTTTTTTATGGAACAGTGTTCTGTAAAAGTTTTGTAAGATCCCTTGGCAATAACACACTTGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
44
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-32-5p(1), mmu-miR-7b-5p(1), mmu-miR-206-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-92a-3p(1), mmu-miR-130a-3p(1), mmu-miR-216a-5p(1), mmu-miR-101b-3p(1), mmu-miR-7a-5p(1), mmu-miR-25-3p(1), mmu-miR-181b-5p(1), mmu-miR-495-3p(1), mmu-miR-136-5p(1), mmu-miR-431-5p(1), mmu-miR-494-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-182-5p(1), mmu-miR-130b-3p(1), mmu-miR-301b-3p(1), mmu-miR-721(1), mmu-miR-218-5p(1), mmu-miR-192-5p(1), mmu-miR-382-5p(1), mmu-miR-370-3p(1), mmu-miR-183-5p(1), mmu-miR-215-5p(1), mmu-miR-362-5p(1), mmu-miR-34b-5p(1), mmu-miR-301a-3p(1), mmu-miR-224-5p(1), mmu-miR-325-3p(1), mmu-miR-384-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-3065-5p(1), mmu-miR-540-3p(1), mmu-miR-697(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACTTCTTCAACAGGGAAAGAGATGCT
siRNA sets
CTTTCCCTGTTGAAGAAGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASH1L_5177_ORF_1
0.7988
0.012758295
1
5151
ORF sequence:
ATGGACCCTAGGAATACTGCTATGTTAGGATTGGGTTCTGATTCCGAAGGATTTTCAAGAAAGAGTCCTTCTACCATCAATCCTGGCACTCTGGCCAGCAAAAGAGAAGCAGAGATAGAGGGTGCCACAGAAGAAGAGGATCCTCGCAAGCGGAATCGAGAAAGGGGCACAGAAGCAGGAAAGGAGGATGGCTCGACGGATGCACAGCAACAGTTTTCAGTGAAAGAAACAAACTTTTCAGAGGGAAACTTAAAATTGAAAATTGGCCTTCAGGCAAAGAGAACTAAAAAGCCTCCAAAGAACTTGGAGAACTATGTGTGTCGACCTGCCATAAAGACAACCATCAAGCACTCAAGGAAAGCACTTAAAAGTGGGAAGATGACAGATGAGAAGAATGAGCACTGCCCTTCAAAATGGGACTCTTCAAAATTGTTCAAGAAAGCAGGTGACGCTACAGCCATCGACTGCCAAGCCGAAGAAAGCATCCATCTTCATTCACAGGGGGAAAGTAATCCTTTGTCTAAGAAGCTTTCTCCAGTACATTCACAAATGGCAGATTACATTAGTGCAGCACCATCTCTTGTTGGCAGTCGAGATCCTGATATAAAGGACAGAGCATTACTTAATGGAGGAACTAGTGTAACAGAAAAGTTGGCACAGCTCATTGCTACCTGTCCTCCTTCCAAGTCTTCCAAGGCAAAACCGAAGAAGTTAGGAACTGGCACTACAGTTGGATTGGTTAGCAAGGACTTGATCAGGAAACCAGGTGTTGGCTCTATAGCTGGAATAATTCATAAAGACTTAATTAAAAAGCCAGCTCTTAGCACAGCAGTTGGGTTGGTAACTAAAGATCCAGGGAAAAAGCCTATGTTCAATGCAGCAGTAGGCCTGATCAATAAGGACTCTGTGAAAAAATTGGGAACTGGCACTACAGCCGTATTCATTAATAAAGACTTAGGCAAAAAGCCAGGGGCTATCACTACAGTTGGACTGCTGAGCAAAGAATCAGGAAAGAAGCTAGGCATTGGTATTGTTCCAGGGCTAGTGAATAAAGAGTCTGGCAAGAAATTAGGACTTGGCACCGTAGTTGGACTGGTTAATAAAGAGTTGGGAAAGAAACTGAGTTCTACAGTTGGCCTAGTGGCCAAGGATGTTACGAAGAAGATTGTAGCAAGCTCAGCAATGGGATTGGTTAATAAGGACATTGGAAAGAAATTATTAAATTGTCCTATGGCAGGACAACTGGGCAGTAAAGATGCCTTAAACCTTAAATCTGAAGCACTGCTCCCCACTCAGGAACAACTTAAGGCTTCCTGTAGTGCAAACATAAGTAATCATGACAGTCAAGAACTTCCTGAGTCTCTGAAAGACAGTGCTACCGGCAAAGCTTTTGAGAAGAGTGTTATGCGGCATAGTAAAGAAAGCATGTTGGAAAAATTTTCAGTCCGAAAAGAAATTACTAATTTGGAGAAAGAAATGTTTAATGAAGGAACATGCATTCAGCAAGACAATTTCTCATCTAGTGAAAGGGGAGCCTTTGAAACCTCAAAACATGAAAAGCAGCCTCCTGTGTATTGCACTTCTCCTGACTTTCAAATAGGAGGTGCCTCTGATGCCTCTACAGCTAAATCTCCCTTCAGTGCAGTAGGCGAAAGCAACCTTCCTTCCTCGTCACCTACTGTATCTGTTAATCCTGTAACCAGGAGTCCCCCTGAAGCTTCTTCACAGTTGGTTCCAAACCCATTACTTTTAAATTCTACAGCAGAACAAATGGAAGAAATCTCTGAATCTATTGGAAAGAGCCAGTTTACTGCTGAAAGTACCCACTTGAATGTTGGTCACAGATCATTAGGTCATAGCTTAAGTATTGAGTGTAAAGGAATTGATAAAGAACTAAATGAATCAAAAAATACACATCTAGATATTCCTAGAATAAGTTCTTCCTTGGGAAAAAAGCCAAGTTTGACTTCTGACTCTGGTATTCATGCAATTACTCCTTCCGTTGTTAATTTTACTAGTTTGTTTAGTAACAAACCTTTTTTAAAGCTTGGTGCAGTCACTGCACCAGACAAACACTGCCAGGTTGCTGAAAGCCTAAGCTCGAGTTTCCAGTCCAAACCATTGAAAAAAAGAAAAGGAAGAAAACCTCGGTGGACTAAAGTGGTGGCAAGAAGCACATGCCGGTCTCCAAAAGGACTAGACTTAGAAAGATCAGAGCTTTTTAAGAATGTTTCTTGTAGCTCACTATCAAATAGTTCTGAGCCAGCGAAGTTTATGAAAACTATCGGAGCATCATCATTCGTCGATCATGACTTCCTTAAACGCCGATTGCCAAAGTTGAGTAAGTCTTCAGCTCCATCTCTTGCTCTTTTAACCGACAGCGAGAAACCATCTCATAAGTCTTTTATTACTCACAAACTGTCCTCCAGTATGTGTGTCACTAGCGATCTTTTGTCGGATATTTATAAGCCCAAGAGAGGAAGACCTAAATCCAAGGAAATGCCTCAGCTAGAAGGTCCACCTAAAAGGACTTTAAAAATACCTGCCTCTAAAGTTTTTTCTTTACAGTCTAAAGAAGAGCAAGAACCCCCAATTTTACAACCAGAAATTGAAATTCCTTCCTTCAAGCAAAGTTTGTCTGTATCTCCTTTTCCAAAAAAAAGAGGCAGGCCTAAGAGGCAGATGAGGTCTCCAGTGAAGATGAAACCCCCTGTCCTGTCAGTGGCTCCATTTGTTGCCACTGAAAGTCCAAGTAAGCTCGAGTCTGAAAGTGAGAACCATAGAAGTAGCAGTGACTTTTTTGAGAGTGAGGACCAGCTTCAGGACACAGACGACTTAGATGACAGTCACAGGCAAAGTGTCTGTAGTATGAGTGACCTTGAGATGGAACCAGATAAAAAAATTAGCAAGCGAAACAATGGACAATTAATGAAAACAATTATCCGAAAAATAAATAAAATGAAGACTTTAAAGAGAAAAAAACTGTTGAATCAGATTCTTTCGAGTTCTGTAGAATCAAGTAATAAAGGAAAAGTGCAGTCCAAGCTTCACAATACAGTCTCAAGTCTTGCTGCCACATTTGGCTCTAAATTGGGGCAACAAATCAATGTCAGCAAGAAAGGAACCATTTACATAGGGAAGAGAAGGGGGCGGAAACCAAAAACCGTCTTAAATGGCCTGCTTTCTGGTAGCCCTGCCAGCCTTGCTGTGCTTGAACAAACAGCTCAGCAGGCAGCTGGGTCAGCATTAGGACAGATCCTCCCCCCTTTACTGCCATCACCTGCTAGTAGCTCTGAGATCCTTCCATCACCTATTTGCTCTCAGTCTTCTGGGACTAGTGGAGGTCAGAGCCCTGTTAGTAGTGACGCAGGCTTTGTTGAACCTAGCTCAGTGCCATATTTGCATGTGCACTCCAGACAGGGCAGTATGATTCAGACTCTTGCAATGAAGAAGGCTTCCAAGGGCAGAAGGCGGCTCTCTCCTCCTACTTTGTTGCCAAATTCTCCTTCTCATTTGAGTGAACTCACATCCCTGAAAGAAGCCACTCCTTCCCCAGTTAGTGAGTCTCATAGTGACGAGACCATTCCCAGTGACAGTGGCATTGGGACAGATAATAATAGCACATCAGACAGGGCAGAGAAGTTTTGTGGACAGAAAAAGAGGAGACATTCTTTTGAGCACATTTCTCTGATTCCCCCTGAAACTTCTACCGTCCTAAACAGTCTCAAAGAAAAACACAAACACAAATGTAAGCGCAGGAGTCACGATTACCTCAGCTATGACAAGATGAAAAGACAGAAGCGAAAACGGAAAAAGAAATATCCCCAGCTTCGAAATAGGCAGGATCCAGACTTCATCGCAGAACTAGAGGAGCTGATAAGTCGTCTAAGTGAGATTCGGATCACCCATCGAAGCCATCATTTTATTCCCCGAGACCTCCTGCCAACTATTTTTCGAATCAACTTTAATAGTTTCTATACACATCCTTCTTTTCCCTTAGACCCATTGCACTACATTCGGAAACCTGACTTAAAAAAGAAACGAGGGAGGCCCCCTAAGATGAGGGAGGCAATGGCAGAAATGCCTTTTATGCACAGCCTTAGTTTTCCTTTATCTAGTACTGGATTTTATCCTTCTTATGGCATGCCTTACTCTCCCTCACCCCTTACAGCTGCTCCAATAGGATTAGGGTATTATGGAAGGTATCCCCCCACTCTTTATCCACCGCCACCATCTCCTTCATTCACCACTCCACTGCCACCTCCCTCCTATATGCATGCTGGTCATTTATTGCTCAATCCTACCAAATATCATAAGAAAAAGCATAAGCTGCTTAGACAGGAGGCTTTTCTTACAACCAGCAGGACCCCTCTCCTTTCCATGAGCACCTACCCCAGCGTACCTCCAGAGATGGCTTATGGTTGGATGGTGGAGCACAAACACAGACACCGTCACAAACACAGAGAGCACCGTTCTGAACAGCCCCAGGTTTCCATGGATAGTGGCTCTTCCAGATCCGTCTTGGAGTCTTTGAAACGTTACCGATTTGGTAAGGATACTGTTGGAGATCGATATAAGCATAAGGAAAAGCACAGGTGTCACATGTCCTGCCCTCATCTCTCTCCTTCAAAGAACTTAATAAACAGAGAAGAACAGTGGGTTTCTCGAGAGCCTTCAGAATCAAGTTCTTTAGCCTTGGGATTGCAAACACCTTTACAAATTGACTGCTCAGAAAGTTCTCCCAGTTTGTCCCTTGGAGGATTTACTCCCAATTCTGAGCCAGCCAGCAGTGATGAACATATGAACCTTTTTACAAGTGCAATAGGCAGCTGCAGAGTTTCAAACCCTAACTCCAGTTGCCGGAAGAAATTAACTGACAGCCCTGGGCTCTTTCCTGTACAAGATACTGCACTAAATCGGCCTCACAGAAAGGAACCATTACCTTCCAGTGAAAGGGCAATACAGTCGTTGGCAGGTTCCCAGTCAGCTTCCGATAAACCTTCCCAGCGATCATCAGAAAGCACAAATTGTAGCCCTACTCGTAAAAGGTCTTCATCTGAGAGTACTTCTTCAACAGGGAAAGAGATGCTGGTTGCAAGTTTTGGAAAACCCTATTTTTTTATGGAACAGTGTTCTGTAAAAGTTTTGTAA
Peptide sequence:
MDPRNTAMLGLGSDSEGFSRKSPSTINPGTLASKREAEIEGATEEEDPRKRNRERGTEAGKEDGSTDAQQQFSVKETNFSEGNLKLKIGLQAKRTKKPPKNLENYVCRPAIKTTIKHSRKALKSGKMTDEKNEHCPSKWDSSKLFKKAGDATAIDCQAEESIHLHSQGESNPLSKKLSPVHSQMADYISAAPSLVGSRDPDIKDRALLNGGTSVTEKLAQLIATCPPSKSSKAKPKKLGTGTTVGLVSKDLIRKPGVGSIAGIIHKDLIKKPALSTAVGLVTKDPGKKPMFNAAVGLINKDSVKKLGTGTTAVFINKDLGKKPGAITTVGLLSKESGKKLGIGIVPGLVNKESGKKLGLGTVVGLVNKELGKKLSSTVGLVAKDVTKKIVASSAMGLVNKDIGKKLLNCPMAGQLGSKDALNLKSEALLPTQEQLKASCSANISNHDSQELPESLKDSATGKAFEKSVMRHSKESMLEKFSVRKEITNLEKEMFNEGTCIQQDNFSSSERGAFETSKHEKQPPVYCTSPDFQIGGASDASTAKSPFSAVGESNLPSSSPTVSVNPVTRSPPEASSQLVPNPLLLNSTAEQMEEISESIGKSQFTAESTHLNVGHRSLGHSLSIECKGIDKELNESKNTHLDIPRISSSLGKKPSLTSDSGIHAITPSVVNFTSLFSNKPFLKLGAVTAPDKHCQVAESLSSSFQSKPLKKRKGRKPRWTKVVARSTCRSPKGLDLERSELFKNVSCSSLSNSSEPAKFMKTIGASSFVDHDFLKRRLPKLSKSSAPSLALLTDSEKPSHKSFITHKLSSSMCVTSDLLSDIYKPKRGRPKSKEMPQLEGPPKRTLKIPASKVFSLQSKEEQEPPILQPEIEIPSFKQSLSVSPFPKKRGRPKRQMRSPVKMKPPVLSVAPFVATESPSKLESESENHRSSSDFFESEDQLQDTDDLDDSHRQSVCSMSDLEMEPDKKISKRNNGQLMKTIIRKINKMKTLKRKKLLNQILSSSVESSNKGKVQSKLHNTVSSLAATFGSKLGQQINVSKKGTIYIGKRRGRKPKTVLNGLLSGSPASLAVLEQTAQQAAGSALGQILPPLLPSPASSSEILPSPICSQSSGTSGGQSPVSSDAGFVEPSSVPYLHVHSRQGSMIQTLAMKKASKGRRRLSPPTLLPNSPSHLSELTSLKEATPSPVSESHSDETIPSDSGIGTDNNSTSDRAEKFCGQKKRRHSFEHISLIPPETSTVLNSLKEKHKHKCKRRSHDYLSYDKMKRQKRKRKKKYPQLRNRQDPDFIAELEELISRLSEIRITHRSHHFIPRDLLPTIFRINFNSFYTHPSFPLDPLHYIRKPDLKKKRGRPPKMREAMAEMPFMHSLSFPLSSTGFYPSYGMPYSPSPLTAAPIGLGYYGRYPPTLYPPPPSPSFTTPLPPPSYMHAGHLLLNPTKYHKKKHKLLRQEAFLTTSRTPLLSMSTYPSVPPEMAYGWMVEHKHRHRHKHREHRSEQPQVSMDSGSSRSVLESLKRYRFGKDTVGDRYKHKEKHRCHMSCPHLSPSKNLINREEQWVSREPSESSSLALGLQTPLQIDCSESSPSLSLGGFTPNSEPASSDEHMNLFTSAIGSCRVSNPNSSCRKKLTDSPGLFPVQDTALNRPHRKEPLPSSERAIQSLAGSQSASDKPSQRSSESTNCSPTRKRSSSESTSSTGKEMLVASFGKPYFFMEQCSVKVL
IRESfinder result
IRESfinder score
0.693716136
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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