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mmu_circAscc3_644

Basic information of circular RNA
PanCircBase ID:

mmu_circAscc3_644

mm39_Chr. Position ID:

chr10|50594387|50604406|+

Gene name:

Ascc3

Transcript:

ENSMUST00000035606.10

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

4

Exon/intron indexes:

22,23,24,25

Exon/intron offsets:

0,2320,3481,9798

Genomic length:

10019

Exon/intron sizes in nt:

15,59,91,69,221

Flanking exon/introns:

chr10:50592806-50594387|chr10:50604406-50606007

Splice length:

644

Other database IDs:

circBase: hsa_circ_0077470, circAtlas: hsa-ASCC3_0149

Human Ortholog IDs:
Mature spliced Sequence:

GTCACATTTTGCATCATGTGAATATTGGACTGAAGGTCAAACAGTGTGTTCATCAAATTCCTTCTGTTACAATGGAAGCTTCCATTCAGCCCATCACACGGACTGTCCTCCGAGTATCACTGAACATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGAAGATCCTACAAATGACCATATTTATCACTCGGAGTACTTTCTAGCTCTTAAAAAACAGGTTATTAATAAGGAAGCTCAACTTCTGGTATTTACAATTCCTATTTTTGAGCCTTTGCCCTCTCAGTACTACATTCGAGCAGTGTCTGATCGATGGCTAGGAGCTGAAGCTGTTTGCATTATCAACTTTCAACATCTGATTCTACCAGAGAGACATCCTCCCCATACAGAATTATTGGACCTTCAACCTTTACCAATTACAGCTTTGGGGTGCAAAGCATATGAAGCTCTATATAACTTCAGCCACTTTAACCCTGTACAGACGCAGATATTCCACACACTGTATCACACAGACTGTAATGTTCTGCTTGGCGCCCCCACCGGATCAGGAAAGACAGTTGCAGCTGAACTAGCCATTTTCAGAGTTTTCAACAAATATCCTACTTCAAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CCCACCGGATCAGGAAAGAC

60.11

CGTGTGATGGGCTGAATGGA

60.39

175

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CCCACCGGATCAGGAAAGAC

60.11

TGATGGGCTGAATGGAAGCT

59.37

171

PCR template sequence:

AGACTGTAATGTTCTGCTTGGCGCCCCCACCGGATCAGGAAAGACAGTTGCAGCTGAACTAGCCATTTTCAGAGTTTTCAACAAATATCCTACTTCAAAGGTCACATTTTGCATCATGTGAATATTGGACTGAAGGTCAAACAGTGTGTTCATCAAATTCCTTCTGTTACAATGGAAGCTTCCATTCAGCCCATCACACG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

2

Interacting miRNAs (#binding sites)

mmu-miR-320-3p(1), mmu-miR-539-5p(1)

siRNAs for circular RNA silencing
Junction sequence

TCCTACTTCAAAGGTCACATTTTGCA

siRNA sets

AAAATGTGACCTTTGAAGT,ATGTGACCTTTGAAGTAGG,AATGTGACCTTTGAAGTAG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCASCC3_644_ORF_1

0.8669

-0.021343943

0.631379143

594

ORF sequence:

ATGGAAGCTTCCATTCAGCCCATCACACGGACTGTCCTCCGAGTATCACTGAACATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGAAGATCCTACAAATGACCATATTTATCACTCGGAGTACTTTCTAGCTCTTAAAAAACAGGTTATTAATAAGGAAGCTCAACTTCTGGTATTTACAATTCCTATTTTTGAGCCTTTGCCCTCTCAGTACTACATTCGAGCAGTGTCTGATCGATGGCTAGGAGCTGAAGCTGTTTGCATTATCAACTTTCAACATCTGATTCTACCAGAGAGACATCCTCCCCATACAGAATTATTGGACCTTCAACCTTTACCAATTACAGCTTTGGGGTGCAAAGCATATGAAGCTCTATATAACTTCAGCCACTTTAACCCTGTACAGACGCAGATATTCCACACACTGTATCACACAGACTGTAATGTTCTGCTTGGCGCCCCCACCGGATCAGGAAAGACAGTTGCAGCTGAACTAGCCATTTTCAGAGTTTTCAACAAATATCCTACTTCAAAGGTCACATTTTGCATCATGTGA

Peptide sequence:

MEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKVTFCIM

IRESfinder result

IRESfinder score

0.814237779

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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