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mmu_circAscc1_377
Basic information of circular RNA
PanCircBase ID:
mmu_circAscc1_377
mm39_Chr. Position ID:
chr10|59843548|59849596|+
Gene name:
Ascc1
Transcript:
ENSMUST00000219778.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
3,4,5
Exon/intron offsets:
0,4735,5869
Genomic length:
6048
Exon/intron sizes in nt:
1,00,98,179
Flanking exon/introns:
chr10:59840749-59843548|chr10:59849596-59861544
Splice length:
377
Other database IDs:
circBase: hsa_circ_0018737, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_2290
Human Ortholog IDs:
Mature spliced Sequence:
ACTCCATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAGCACATAGTTGGAAAGAGAGGGGATACCAAGAAAAAGATAGAAGTGGAGACTAAAACATCTATTAACATTCCGAAGCATGGGCATGAAGGGGAAATCGTGATCACTGGTCAGCATCGAAATGGCGTGGTCTCAGCGCGAACACGGATCGACGTGCTCCTGGACACGTTCAGGAGGAGGCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTCAATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCCTTTTACCCACTTCC
59.11
GTCTGTGCCACCTCGTAGG
59.78
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGCCTTTTACCCACTTCC
59.11
GGTCTGTGCCACCTCGTAG
59.78
153
PCR template sequence:
GCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTCAATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAGACTCCATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-miR-205-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGTGCTCCAAGACTCCATGGAATA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCASCC1_377_ORF_1
1.0596
0.25651728
0.772478931
480
ORF sequence:
ATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAGCACATAGTTGGAAAGAGAGGGGATACCAAGAAAAAGATAGAAGTGGAGACTAAAACATCTATTAACATTCCGAAGCATGGGCATGAAGGGGAAATCGTGATCACTGGTCAGCATCGAAATGGCGTGGTCTCAGCGCGAACACGGATCGACGTGCTCCTGGACACGTTCAGGAGGAGGCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTCAATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAGACTCCATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAGCACATAG
Peptide sequence:
MEYSDEPCGAYEVAQTPHGFRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRIDVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKTPWNTLMSPAVPTRWHRPLTDSGPPSVPLACSTST
IRESfinder result
IRESfinder score
0.384433113
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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