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mmu_circAscc1_377

Basic information of circular RNA
PanCircBase ID:

mmu_circAscc1_377

mm39_Chr. Position ID:

chr10|59843548|59849596|+

Gene name:

Ascc1

Transcript:

ENSMUST00000219778.2

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

3

Exon/intron indexes:

3,4,5

Exon/intron offsets:

0,4735,5869

Genomic length:

6048

Exon/intron sizes in nt:

1,00,98,179

Flanking exon/introns:

chr10:59840749-59843548|chr10:59849596-59861544

Splice length:

377

Other database IDs:

circBase: hsa_circ_0018737, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_2290

Human Ortholog IDs:
Mature spliced Sequence:

ACTCCATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAGCACATAGTTGGAAAGAGAGGGGATACCAAGAAAAAGATAGAAGTGGAGACTAAAACATCTATTAACATTCCGAAGCATGGGCATGAAGGGGAAATCGTGATCACTGGTCAGCATCGAAATGGCGTGGTCTCAGCGCGAACACGGATCGACGTGCTCCTGGACACGTTCAGGAGGAGGCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTCAATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GCAGCCTTTTACCCACTTCC

59.11

GTCTGTGCCACCTCGTAGG

59.78

152

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCAGCCTTTTACCCACTTCC

59.11

GGTCTGTGCCACCTCGTAG

59.78

153

PCR template sequence:

GCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTCAATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAGACTCCATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

3

Interacting miRNAs (#binding sites)

mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-miR-205-5p(1)

siRNAs for circular RNA silencing
Junction sequence

GAAGTGCTCCAAGACTCCATGGAATA

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCASCC1_377_ORF_1

1.0596

0.25651728

0.772478931

480

ORF sequence:

ATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAGCACATAGTTGGAAAGAGAGGGGATACCAAGAAAAAGATAGAAGTGGAGACTAAAACATCTATTAACATTCCGAAGCATGGGCATGAAGGGGAAATCGTGATCACTGGTCAGCATCGAAATGGCGTGGTCTCAGCGCGAACACGGATCGACGTGCTCCTGGACACGTTCAGGAGGAGGCAGCCTTTTACCCACTTCCTTTCCTTCTTCCTCAATGAAGTTGAGGTTCAGGAACGGTTTCTGATGTTCCAGGAGGAGGTGCTGAGGAAGTGCTCCAAGACTCCATGGAATACTCTGATGAGCCCTGCGGTGCCTACGAGGTGGCACAGACCCCTCACGGATTCCGGGCCACCGTCAGTGCCCCTAGCCTGCTCTACAAGCACATAG

Peptide sequence:

MEYSDEPCGAYEVAQTPHGFRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVITGQHRNGVVSARTRIDVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKTPWNTLMSPAVPTRWHRPLTDSGPPSVPLACSTST

IRESfinder result

IRESfinder score

0.384433113

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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