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mmu_circArsb_315
Basic information of circular RNA
PanCircBase ID:
mmu_circArsb_315
mm39_Chr. Position ID:
chr13|93998594|94017066|+
Gene name:
Arsb
Transcript:
ENSMUST00000091403.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
5,6
Exon/intron offsets:
0,18401
Genomic length:
18472
Exon/intron sizes in nt:
244,71
Flanking exon/introns:
chr13:93944211-93998594|chr13:94017066-94075734
Splice length:
315
Other database IDs:
circBase: mmu_circ_0004891, CIRCpedia: MMU_CIRCpedia_34634, circAtlas: mmu-Arsb_0002
circAtlas: hsa-ARSB_0006, CIRCpedia: HSA_CIRCpedia_346540
Human Ortholog IDs:
Mature spliced Sequence:
ATAACGGTGGGCAGACTAGGTCTGGAGGCAACAACTGGCCACTCCGAGGAAGGAAGGGGACCCTGTGGGAAGGGGGCATCCGAGGAACGGGCTTCGTGGCAAGCCCCTTGCTGAAACAGAAAGGCGTGAAGAGCCGGGAACTCATGCACATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATGGCTTCAACATGTGGAAGACAATCAGTGAAGGACACCCATCCCCGAGAGTGGAGCTGCTACACAACATCGATCAGGACTTTTTTGATGGCTTGCCAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGAGAGTGGAGCTGCTACAC
60.18
TTCCTCGGATGCCCCCTT
60.29
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGAGAGTGGAGCTGCTACAC
60.18
TTCCTCGGATGCCCCCTTC
61.38
141
PCR template sequence:
GATGGCTTCAACATGTGGAAGACAATCAGTGAAGGACACCCATCCCCGAGAGTGGAGCTGCTACACAACATCGATCAGGACTTTTTTGATGGCTTGCCATATAACGGTGGGCAGACTAGGTCTGGAGGCAACAACTGGCCACTCCGAGGAAGGAAGGGGACCCTGTGGGAAGGGGGCATCCGAGGAACGGGCTTCGTGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GATGGCTTGCCATATAACGGTGGGCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARSB_315_ORF_1
0.9914
0.273626845
0.770595346
486
ORF sequence:
ATGCACATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATGGCTTCAACATGTGGAAGACAATCAGTGAAGGACACCCATCCCCGAGAGTGGAGCTGCTACACAACATCGATCAGGACTTTTTTGATGGCTTGCCATATAACGGTGGGCAGACTAGGTCTGGAGGCAACAACTGGCCACTCCGAGGAAGGAAGGGGACCCTGTGGGAAGGGGGCATCCGAGGAACGGGCTTCGTGGCAAGCCCCTTGCTGAAACAGAAAGGCGTGAAGAGCCGGGAACTCATGCACATCACCGATTGGCTCCCCACACTCGTAGATCTGGCTGGGGGAAGCACTAATGGAACCAAACCTCTGGATGGCTTCAACATGTGGAAGACAATCAGTGAAGGACACCCATCCCCGAGAGTGGAGCTGCTACACAACATCGATCAGGACTTTTTTGATGGCTTGCCA
Peptide sequence:
MHITDWLPTLVDLAGGSTNGTKPLDGFNMWKTISEGHPSPRVELLHNIDQDFFDGLPYNGGQTRSGGNNWPLRGRKGTLWEGGIRGTGFVASPLLKQKGVKSRELMHITDWLPTLVDLAGGSTNGTKPLDGFNMWKTISEGHPSPRVELLHNIDQDFFDGLP
IRESfinder result
IRESfinder score
0.351349169
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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