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mmu_circArnt_805
Basic information of circular RNA
PanCircBase ID:
mmu_circArnt_805
mm39_Chr. Position ID:
chr3|95374103|95391159|+
Gene name:
Arnt
Transcript:
ENSMUST00000147765.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
5,6,7,8,9,10,11
Exon/intron offsets:
0,3384,7746,9287,13402,13961,16979
Genomic length:
17056
Exon/intron sizes in nt:
45,214,214,103,66,86,77
Flanking exon/introns:
chr3:95367732-95374103|chr3:95391159-95392169
Splice length:
805
Other database IDs:
circAtlas: mmu-Arnt_0008
Human Ortholog IDs:
Mature spliced Sequence:
GTCGGATGATGAGCAGAGCTCTGCGGATAAAGAGAGACTTGCCAGGGAAAATCATAGTGAAATAGAACGGCGGCGACGGAACAAGATGACAGCTTACATCACAGAACTGTCAGACATGGTACCTACATGTAGTGCCCTGGCTCGAAAACCAGACAAGCTAACCATCTTACGCATGGCCGTTTCTCACATGAAGTCCTTGAGGGGAACTGGCAACACATCTACTGATGGCTCCTACAAGCCATCTTTCCTCACTGATCAGGAACTGAAACATTTGATCTTGGAGGCAGCAGATGGCTTTCTGTTTATTGTCTCCTGTGAGACTGGACGGGTGGTGTATGTCTCTGACTCAGTGACTCCCGTTTTGAACCAGCCACAGTCTGAATGGTTCGGGAGCACACTGTATGATCAGGTGCACCCAGATGATGTGGATAAACTTCGAGAGCAGCTCTCTACATCAGAAAATGCCCTAACAGGGCGGGTCCTGGATCTGAAGACTGGAACAGTGAAAAAGGAAGGCCAGCAGTCTTCCATGAGGATGTGCATGGGCTCACGAAGGTCGTTCATCTGCCGCATGAGGTGTGGTACTAGCTCCGTGGACCCTGTTTCCATGAATAGACTGAGCTTTTTGAGGAACAGATGCAGGAATGGGCTTGGCTCTGTGAAGGAAGGAGAACCTCACTTTGTGGTAGTCCACTGCACAGGCTACATCAAGGCCTGGCCACCAGCAGGTGTCTCCCTCCCAGATGATGACCCAGAGGCTGGCCAGGGGAGCAAATTCTGCCTAGTGGCCATTGGCAGGCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGATGATGACCCAGAGGC
59.89
TGTCATCTTGTTCCGTCGCC
60.67
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGATGATGACCCAGAGGC
59.89
CTGTCATCTTGTTCCGTCGC
59.28
158
PCR template sequence:
CATCAAGGCCTGGCCACCAGCAGGTGTCTCCCTCCCAGATGATGACCCAGAGGCTGGCCAGGGGAGCAAATTCTGCCTAGTGGCCATTGGCAGGCTGCAGGTCGGATGATGAGCAGAGCTCTGCGGATAAAGAGAGACTTGCCAGGGAAAATCATAGTGAAATAGAACGGCGGCGACGGAACAAGATGACAGCTTACATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-370-3p(1), mmu-miR-1198-5p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGCAGGCTGCAGGTCGGATGATGAG
siRNA sets
CATCATCCGACCTGCAGCC, TCATCATCCGACCTGCAGC, CATCCGACCTGCAGCCTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARNT_805_ORF_1
0.8329
0.217135381
0.918085404
729
ORF sequence:
ATGACAGCTTACATCACAGAACTGTCAGACATGGTACCTACATGTAGTGCCCTGGCTCGAAAACCAGACAAGCTAACCATCTTACGCATGGCCGTTTCTCACATGAAGTCCTTGAGGGGAACTGGCAACACATCTACTGATGGCTCCTACAAGCCATCTTTCCTCACTGATCAGGAACTGAAACATTTGATCTTGGAGGCAGCAGATGGCTTTCTGTTTATTGTCTCCTGTGAGACTGGACGGGTGGTGTATGTCTCTGACTCAGTGACTCCCGTTTTGAACCAGCCACAGTCTGAATGGTTCGGGAGCACACTGTATGATCAGGTGCACCCAGATGATGTGGATAAACTTCGAGAGCAGCTCTCTACATCAGAAAATGCCCTAACAGGGCGGGTCCTGGATCTGAAGACTGGAACAGTGAAAAAGGAAGGCCAGCAGTCTTCCATGAGGATGTGCATGGGCTCACGAAGGTCGTTCATCTGCCGCATGAGGTGTGGTACTAGCTCCGTGGACCCTGTTTCCATGAATAGACTGAGCTTTTTGAGGAACAGATGCAGGAATGGGCTTGGCTCTGTGAAGGAAGGAGAACCTCACTTTGTGGTAGTCCACTGCACAGGCTACATCAAGGCCTGGCCACCAGCAGGTGTCTCCCTCCCAGATGATGACCCAGAGGCTGGCCAGGGGAGCAAATTCTGCCTAGTGGCCATTGGCAGGCTGCAGGTCGGATGA
Peptide sequence:
MTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTGNTSTDGSYKPSFLTDQELKHLILEAADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGSTLYDQVHPDDVDKLREQLSTSENALTGRVLDLKTGTVKKEGQQSSMRMCMGSRRSFICRMRCGTSSVDPVSMNRLSFLRNRCRNGLGSVKEGEPHFVVVHCTGYIKAWPPAGVSLPDDDPEAGQGSKFCLVAIGRLQVG
IRESfinder result
IRESfinder score
0.386069949
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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