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mmu_circArih2_273
Basic information of circular RNA
PanCircBase ID:
mmu_circArih2_273
mm39_Chr. Position ID:
chr9|108492223|108494027|-
Gene name:
Arih2
Transcript:
ENSMUST00000013338.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
7,6
Exon/intron offsets:
0,1653
Genomic length:
1804
Exon/intron sizes in nt:
1,22,151
Flanking exon/introns:
chr9:108491034-108492223|chr9:108494027-108494570
Splice length:
273
Other database IDs:
CIRCpedia: MMU_CIRCpedia_2435, circAtlas: mmu-Arih2_0001
circBase: hsa_circ_0065515, circAtlas: hsa-ARIH2_0002, CIRCpedia: HSA_CIRCpedia_46074
Human Ortholog IDs:
Mature spliced Sequence:
GTCCCCACAGCCCATCCCCCTCACCACTGTGCAGTGTGTATGCAATTTGTGCGGAAGGAAAACCTACTCTCTCTGGCCTGCCAACATCAGTTTTGCCGAAGCTGTTGGGAACAGCATTGCTCAGTGCTTGTCAAAGATGGTGTTGGTGTAGGAATCTCATGTATGGCTCAGGATTGTCCACTTCGAACACCAGAGGACTTTGTATTTCCCTTGCTTCCCAATGAAGAATTGAGAGATAAATACAGGCGCTACCTCTTTAGGGACTATGTGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCACTTCGAACACCAGAGGA
59.32
TGGCAGGCCAGAGAGAGTAG
60.69
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCACTTCGAACACCAGAGG
59.32
TGGCAGGCCAGAGAGAGTAG
60.69
180
PCR template sequence:
TTGTCCACTTCGAACACCAGAGGACTTTGTATTTCCCTTGCTTCCCAATGAAGAATTGAGAGATAAATACAGGCGCTACCTCTTTAGGGACTATGTGGAGGTCCCCACAGCCCATCCCCCTCACCACTGTGCAGTGTGTATGCAATTTGTGCGGAAGGAAAACCTACTCTCTCTGGCCTGCCAACATCAGTTTTGCCGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-29b-3p(1), mmu-let-7d-5p(1), mmu-miR-98-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGACTATGTGGAGGTCCCCACAGCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARIH2_273_ORF_1
0.7548
0.024491651
0.476661201
507
ORF sequence:
ATGCAATTTGTGCGGAAGGAAAACCTACTCTCTCTGGCCTGCCAACATCAGTTTTGCCGAAGCTGTTGGGAACAGCATTGCTCAGTGCTTGTCAAAGATGGTGTTGGTGTAGGAATCTCATGTATGGCTCAGGATTGTCCACTTCGAACACCAGAGGACTTTGTATTTCCCTTGCTTCCCAATGAAGAATTGAGAGATAAATACAGGCGCTACCTCTTTAGGGACTATGTGGAGGTCCCCACAGCCCATCCCCCTCACCACTGTGCAGTGTGTATGCAATTTGTGCGGAAGGAAAACCTACTCTCTCTGGCCTGCCAACATCAGTTTTGCCGAAGCTGTTGGGAACAGCATTGCTCAGTGCTTGTCAAAGATGGTGTTGGTGTAGGAATCTCATGTATGGCTCAGGATTGTCCACTTCGAACACCAGAGGACTTTGTATTTCCCTTGCTTCCCAATGAAGAATTGAGAGATAAATACAGGCGCTACCTCTTTAGGGACTATGTGGAG
Peptide sequence:
MQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKYRRYLFRDYVEVPTAHPPHHCAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKYRRYLFRDYVE
IRESfinder result
IRESfinder score
0.638045282
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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