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mmu_circArih1_468
Basic information of circular RNA
PanCircBase ID:
mmu_circArih1_468
mm39_Chr. Position ID:
chr9|59319707|59344198|-
Gene name:
Arih1
Transcript:
ENSMUST00000171975.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
7,6,5,4,3
Exon/intron offsets:
0,2345,13698,14189,24346
Genomic length:
24491
Exon/intron sizes in nt:
107,67,56,93,145
Flanking exon/introns:
chr9:59315700-59319707|chr9:59344198-59361684
Splice length:
468
Other database IDs:
circBase: mmu_circ_0001781, CIRCpedia: MMU_CIRCpedia_24487, circAtlas: mmu-Arih1_0002
circBase: hsa_circ_0104489, circAtlas: hsa-ARIH1_0003, CIRCpedia: HSA_CIRCpedia_15572
Human Ortholog IDs:
Mature spliced Sequence:
GTACTTTGATGGAAACCTGGAGAAGCTCTTTGCTGAGTGTCATGTAATTAATCCAAGTAAAAAGTCTCGAACTCGCCAGATGAATACAAGGTCATCGGCACAGGATATGCCGTGTCAGATCTGCTACTTGAACTACCCTAACTCGTATTTTACTGGCCTTGAATGTGGACATAAGTTTTGTATGCAGTGCTGGAGTGAATATTTAACTACAAAAATAATGGAGGAAGGCATGGGGCAGACTATTTCGTGTCCTGCGCATGGTTGTGATATCTTAGTGGATGACAACACAGTTATGCGCCTGATCACAGATTCCAAAGTTAAGTTAAAATATCAACATTTAATAACAAATAGCTTTGTAGAGTGCAACCGACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCACCATGTTGTTAAAGTCCAGTATCCTGATGCAAAACCAGTTCGCTGCAAATGTGGCCGCCAGTTTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTAAAGTGGTGTCCTGCCCC
59.89
TCATCTGGCGAGTTCGAGAC
59.55
178
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTAAAGTGGTGTCCTGCCCC
59.89
CATCTGGCGAGTTCGAGACT
59.55
177
PCR template sequence:
GACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCACCATGTTGTTAAAGTCCAGTATCCTGATGCAAAACCAGTTCGCTGCAAATGTGGCCGCCAGTTTTGGTACTTTGATGGAAACCTGGAGAAGCTCTTTGCTGAGTGTCATGTAATTAATCCAAGTAAAAAGTCTCGAACTCGCCAGATGAATACAAGGTCATCGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-181a-5p(1), mmu-miR-217-5p(1), mmu-miR-136-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
GCCGCCAGTTTTGGTACTTTGATGGA
siRNA sets
TCAAAGTACCAAAACTGGC, ATCAAAGTACCAAAACTGG, AAGTACCAAAACTGGCGGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARIH1_468_ORF_1
0.6265
0.000458643
0.888140348
855
ORF sequence:
ATGAATACAAGGTCATCGGCACAGGATATGCCGTGTCAGATCTGCTACTTGAACTACCCTAACTCGTATTTTACTGGCCTTGAATGTGGACATAAGTTTTGTATGCAGTGCTGGAGTGAATATTTAACTACAAAAATAATGGAGGAAGGCATGGGGCAGACTATTTCGTGTCCTGCGCATGGTTGTGATATCTTAGTGGATGACAACACAGTTATGCGCCTGATCACAGATTCCAAAGTTAAGTTAAAATATCAACATTTAATAACAAATAGCTTTGTAGAGTGCAACCGACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCACCATGTTGTTAAAGTCCAGTATCCTGATGCAAAACCAGTTCGCTGCAAATGTGGCCGCCAGTTTTGGTACTTTGATGGAAACCTGGAGAAGCTCTTTGCTGAGTGTCATGTAATTAATCCAAGTAAAAAGTCTCGAACTCGCCAGATGAATACAAGGTCATCGGCACAGGATATGCCGTGTCAGATCTGCTACTTGAACTACCCTAACTCGTATTTTACTGGCCTTGAATGTGGACATAAGTTTTGTATGCAGTGCTGGAGTGAATATTTAACTACAAAAATAATGGAGGAAGGCATGGGGCAGACTATTTCGTGTCCTGCGCATGGTTGTGATATCTTAGTGGATGACAACACAGTTATGCGCCTGATCACAGATTCCAAAGTTAAGTTAAAATATCAACATTTAATAACAAATAGCTTTGTAGAGTGCAACCGACTGTTAAAGTGGTGTCCTGCCCCAGATTGCCACCATGTTGTTAAAGTCCAGTATCCTGATGCAAAACCAGTTCGCTGCAAATGTGGCCGCCAGTTT
Peptide sequence:
MNTRSSAQDMPCQICYLNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFWYFDGNLEKLFAECHVINPSKKSRTRQMNTRSSAQDMPCQICYLNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQF
IRESfinder result
IRESfinder score
0.689080178
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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