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mmu_circArhgap32_563
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap32_563
mm39_Chr. Position ID:
chr9|32119479|32157825|+
Gene name:
Arhgap32
Transcript:
ENSMUST00000174641.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
10,11,12,13,14
Exon/intron offsets:
0,31078,36968,37734,38263
Genomic length:
38346
Exon/intron sizes in nt:
82,150,103,145,83
Flanking exon/introns:
chr9:32101357-32119479|chr9:32157825-32158403
Splice length:
563
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAATTAACCAGAAAGTTCCTCAGTCAGTAACCAACTCAGTGCCAAAACCAGTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGTCATGAATTTGATTCTGAGCATGTCCCCGACCTGACAAAAGAACCTTATGTTCAAGACATCCATTCTGTGGGCTCCCTCTGTAAGCTGTACTTCCGAGAACTCCCAAACCCTCTGCTCACCTACCAGCTATACGAGAAGTTCTCTGATGCTGTTTCAGCAGCAACGGATGAAGAACGGTTGATAAAAATCCATGATGTCATCCAGCAACTCCCCCCACCACACTATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAACGGATGAAGAACGGT
59.97
AGACACTGGTTTTGGCACTGA
60.06
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCAACGGATGAAGAACGGT
59.97
CTGGTTTTGGCACTGAGTTGG
59.93
151
PCR template sequence:
TATACGAGAAGTTCTCTGATGCTGTTTCAGCAGCAACGGATGAAGAACGGTTGATAAAAATCCATGATGTCATCCAGCAACTCCCCCCACCACACTATAGGTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAATTAACCAGAAAGTTCCTCAGTCAGTAACCAACTCAGTGCCAAAACCAGTGTCTAAAAAGCACGGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-96-5p(1), mmu-miR-224-5p(1), mmu-miR-335-3p(1), mmu-miR-490-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CACCACACTATAGGTGGGACTCTTCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP32_563_ORF_1
1.0813
0.225175433
0.742869759
471
ORF sequence:
ATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGTCATGAATTTGATTCTGAGCATGTCCCCGACCTGACAAAAGAACCTTATGTTCAAGACATCCATTCTGTGGGCTCCCTCTGTAAGCTGTACTTCCGAGAACTCCCAAACCCTCTGCTCACCTACCAGCTATACGAGAAGTTCTCTGATGCTGTTTCAGCAGCAACGGATGAAGAACGGTTGATAAAAATCCATGATGTCATCCAGCAACTCCCCCCACCACACTATAGGTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAA
Peptide sequence:
MKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRWDSSLVIVSS
IRESfinder result
IRESfinder score
0.665726719
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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