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mmu_circArhgap32_536

Basic information of circular RNA
PanCircBase ID:

mmu_circArhgap32_536

mm39_Chr. Position ID:

chr9|32098929|32156550|+

Gene name:

Arhgap32

Transcript:

ENSMUST00000174641.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

5

Exon/intron indexes:

8,9,10,11,12

Exon/intron offsets:

0,2350,20550,51628,57518

Genomic length:

57621

Exon/intron sizes in nt:

12,37,88,21,50,103

Flanking exon/introns:

chr9:32097717-32098929|chr9:32156550-32157213

Splice length:

536

Other database IDs:

CIRCpedia: MMU_CIRCpedia_215789, circAtlas: mmu-Arhgap32_0028

Human Ortholog IDs:
Mature spliced Sequence:

ATCGACAATAAGGGAAACCATCTTCTAGTTCACGAGGAGTCGTCCATCAACACTCCTGCTGTCGGTGCTGCCCATGTTATCAAGCGCTACACCGCTCGGGCCCCTGATGAACTGACATTAGAGGTGGGAGACATCGTTTCTGTTATTGACATGCCTCCCAAAGTATTAAGCACATGGTGGAGAGGCAAGCATGGATTTCAGGTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAATTAACCAGAAAGTTCCTCAGTCAGTAACCAACTCAGTGCCAAAACCAGTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CCAGGTTCTTCAGAGCTGCA

59.96

AGCAGGAGTGTTGATGGACG

60.04

159

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CCAGGTTCTTCAGAGCTGCA

59.96

CCGACAGCAGGAGTGTTGAT

60.04

164

PCR template sequence:

CCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGATCGACAATAAGGGAAACCATCTTCTAGTTCACGAGGAGTCGTCCATCAACACTCCTGCTGTCGGTGCTGCCCATGTTATCAAGCGCTACACCGCTCGGG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

7

Interacting miRNAs (#binding sites)

mmu-miR-223-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-96-5p(1), mmu-miR-218-5p(1), mmu-miR-224-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-490-3p(1)

siRNAs for circular RNA silencing
Junction sequence

TCCAGAGACTTCGATCGACAATAAGG

siRNA sets

TTATTGTCGATCGAAGTCT,TATTGTCGATCGAAGTCTC,ATTGTCGATCGAAGTCTCT

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCARHGAP32_536_ORF_1

0.7357

0.084507597

0.361934703

414

ORF sequence:

ATGCCTCCCAAAGTATTAAGCACATGGTGGAGAGGCAAGCATGGATTTCAGGTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAATTAACCAGAAAGTTCCTCAGTCAGTAACCAACTCAGTGCCAAAACCAGTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGATCGACAATAAGGGAAACCATCTTCTAG

Peptide sequence:

MPPKVLSTWWRGKHGFQVGLFPGHCVELINQKVPQSVTNSVPKPVSKKHGKLITFLRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRSTIRETIF

IRESfinder result

IRESfinder score

0.608607739

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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