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mmu_circArhgap32_536
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap32_536
mm39_Chr. Position ID:
chr9|32098929|32156550|+
Gene name:
Arhgap32
Transcript:
ENSMUST00000174641.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
8,9,10,11,12
Exon/intron offsets:
0,2350,20550,51628,57518
Genomic length:
57621
Exon/intron sizes in nt:
12,37,88,21,50,103
Flanking exon/introns:
chr9:32097717-32098929|chr9:32156550-32157213
Splice length:
536
Other database IDs:
CIRCpedia: MMU_CIRCpedia_215789, circAtlas: mmu-Arhgap32_0028
Human Ortholog IDs:
Mature spliced Sequence:
ATCGACAATAAGGGAAACCATCTTCTAGTTCACGAGGAGTCGTCCATCAACACTCCTGCTGTCGGTGCTGCCCATGTTATCAAGCGCTACACCGCTCGGGCCCCTGATGAACTGACATTAGAGGTGGGAGACATCGTTTCTGTTATTGACATGCCTCCCAAAGTATTAAGCACATGGTGGAGAGGCAAGCATGGATTTCAGGTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAATTAACCAGAAAGTTCCTCAGTCAGTAACCAACTCAGTGCCAAAACCAGTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGTTCTTCAGAGCTGCA
59.96
AGCAGGAGTGTTGATGGACG
60.04
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGTTCTTCAGAGCTGCA
59.96
CCGACAGCAGGAGTGTTGAT
60.04
164
PCR template sequence:
CCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGATCGACAATAAGGGAAACCATCTTCTAGTTCACGAGGAGTCGTCCATCAACACTCCTGCTGTCGGTGCTGCCCATGTTATCAAGCGCTACACCGCTCGGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-223-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-96-5p(1), mmu-miR-218-5p(1), mmu-miR-224-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCAGAGACTTCGATCGACAATAAGG
siRNA sets
TTATTGTCGATCGAAGTCT,TATTGTCGATCGAAGTCTC,ATTGTCGATCGAAGTCTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP32_536_ORF_1
0.7357
0.084507597
0.361934703
414
ORF sequence:
ATGCCTCCCAAAGTATTAAGCACATGGTGGAGAGGCAAGCATGGATTTCAGGTGGGACTCTTCCCTGGTCATTGTGTCGAGTTAATTAACCAGAAAGTTCCTCAGTCAGTAACCAACTCAGTGCCAAAACCAGTGTCTAAAAAGCACGGCAAGCTCATTACTTTCTTGCGAACATTCATGAAGTCTCGCCCAACAAAACAGAAGCTAAAGCAGCGGGGCATCTTGAAAGAGAGAGTATTCGGTTGTGACTTGGGGGAGCACCTCCTCAATTCTGGGTTTGAAGTGCCCCAGGTTCTTCAGAGCTGCACAGCGTTCATCGAGAGGTATGGCATTGTGGATGGGATATATCGTCTCTCTGGCGTTGCCTCCAATATCCAGAGACTTCGATCGACAATAAGGGAAACCATCTTCTAG
Peptide sequence:
MPPKVLSTWWRGKHGFQVGLFPGHCVELINQKVPQSVTNSVPKPVSKKHGKLITFLRTFMKSRPTKQKLKQRGILKERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRSTIRETIF
IRESfinder result
IRESfinder score
0.608607739
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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