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mmu_circArhgap17_631
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap17_631
mm39_Chr. Position ID:
chr7|122913636|122926566|-
Gene name:
Arhgap17
Transcript:
ENSMUST00000207010.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
9,8,7,6,5,4,3
Exon/intron offsets:
0,230,3973,7174,7465,9199,12825
Genomic length:
12930
Exon/intron sizes in nt:
82,69,11,27,71,12,74,100
Flanking exon/introns:
chr7:122907636-122913636|chr7:122926566-122930448
Splice length:
631
Other database IDs:
circAtlas: hsa-ARHGAP17_0040
Human Ortholog IDs:
Mature spliced Sequence:
ATTGAACGTCGCCTGGACACTGTGCGTTCAATGTGCCACCATTCACATAAGCGTTTGATAGCCTGCTTCCAAGGTCAGCATGGCACTGATGCCGAGAGGAGACATAAAAAGCTTCCTCTGACAGCTCTTGCCCAGAACATGCAGGAGGCTTCAGCCCAGCTGGAAGAGTCTCTCTTGGGGAAGATGCTGGAGACCTGTGGGGACGCTGAGAACCAGCTGGCTCTTGAACTCTCACAACATGAAGTCTTTGTGGAGAAGGAGATCATGGACCCTCTCTACGGCATAGCAGAGGTGGAGATTCCCAATATCCAGAAGCAAAGGAAGCAGCTTGCTAGATTGGTGTTGGACTGGGATTCAGTCAGAGCGAGATGGAACCAAGCACACAAGTCTTCAGGAACCAACTTTCAGGGGCTTCCATCCAAAATAGATACCCTAAAGGAAGAGATGGATGAAGCTGGGAATAAAGTTGAACAGTGCAAGGATCAACTTGCAGCAGACATGTACAACTTCATGGCCAAAGAAGGGGAGTATGGCAAGTTCTTCGTGACGTTATTAGAAGCCCAAGCAGATTACCATAGAAAAGCATTAGCAGTCTTAGAAAAGGCCCTTCCCGAAATGCGCGCCCATCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAAGTTCTTCGTGACGTT
59.06
AATGGTGGCACATTGAACGC
60.04
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAAGTTCTTCGTGACGTT
59.06
GGAAGCAGGCTATCAAACGC
59.62
170
PCR template sequence:
GGCAAGTTCTTCGTGACGTTATTAGAAGCCCAAGCAGATTACCATAGAAAAGCATTAGCAGTCTTAGAAAAGGCCCTTCCCGAAATGCGCGCCCATCAAGATTGAACGTCGCCTGGACACTGTGCGTTCAATGTGCCACCATTCACATAAGCGTTTGATAGCCTGCTTCCAAGGTCAGCATGGCACTGATGCCGAGAGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-155-5p(1), mmu-miR-7b-5p(1), mmu-miR-31-5p(1), mmu-miR-218-5p(1), mmu-miR-382-5p(1), mmu-miR-499-5p(1), mmu-miR-669d-5p(1), mmu-miR-1199-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CGCGCCCATCAAGATTGAACGTCGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP17_631_ORF_1
1.0951
0.234357633
0.890432928
606
ORF sequence:
ATGTGCCACCATTCACATAAGCGTTTGATAGCCTGCTTCCAAGGTCAGCATGGCACTGATGCCGAGAGGAGACATAAAAAGCTTCCTCTGACAGCTCTTGCCCAGAACATGCAGGAGGCTTCAGCCCAGCTGGAAGAGTCTCTCTTGGGGAAGATGCTGGAGACCTGTGGGGACGCTGAGAACCAGCTGGCTCTTGAACTCTCACAACATGAAGTCTTTGTGGAGAAGGAGATCATGGACCCTCTCTACGGCATAGCAGAGGTGGAGATTCCCAATATCCAGAAGCAAAGGAAGCAGCTTGCTAGATTGGTGTTGGACTGGGATTCAGTCAGAGCGAGATGGAACCAAGCACACAAGTCTTCAGGAACCAACTTTCAGGGGCTTCCATCCAAAATAGATACCCTAAAGGAAGAGATGGATGAAGCTGGGAATAAAGTTGAACAGTGCAAGGATCAACTTGCAGCAGACATGTACAACTTCATGGCCAAAGAAGGGGAGTATGGCAAGTTCTTCGTGACGTTATTAGAAGCCCAAGCAGATTACCATAGAAAAGCATTAGCAGTCTTAGAAAAGGCCCTTCCCGAAATGCGCGCCCATCAAGATTGA
Peptide sequence:
MCHHSHKRLIACFQGQHGTDAERRHKKLPLTALAQNMQEASAQLEESLLGKMLETCGDAENQLALELSQHEVFVEKEIMDPLYGIAEVEIPNIQKQRKQLARLVLDWDSVRARWNQAHKSSGTNFQGLPSKIDTLKEEMDEAGNKVEQCKDQLAADMYNFMAKEGEYGKFFVTLLEAQADYHRKALAVLEKALPEMRAHQD
IRESfinder result
IRESfinder score
0.484623027
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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