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mmu_circArhgap12_207
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap12_207
mm39_Chr. Position ID:
chr18|6061846|6064421|-
Gene name:
Arhgap12
Transcript:
ENSMUST00000182066.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,2494
Genomic length:
2575
Exon/intron sizes in nt:
126,81
Flanking exon/introns:
chr18:6057591-6061846|chr18:6064421-6069830
Splice length:
207
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
TGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTACTACAGCGCAGATGGATCTCGGTCAGAGTGGGAATTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGAGAAATAATTAAAAGTAGGAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTTAACTAAATGGAGACATAGCACCATTGTGTTGGACTCCAACGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCGGCTGCAAGAACCAATAG
59.9
GCAATTCCCACTCTGACCGA
60.04
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCGGCTGCAAGAACCAATAG
59.9
TGGCAATTCCCACTCTGACC
59.96
148
PCR template sequence:
AGAAATAATTAAAAGTAGGAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTTAACTAAATGGAGACATAGCACCATTGTGTTGGACTCCAACGACAAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTACTACAGCGCAGATGGATCTCGGTCAGAGTGGGAATTGCCAAAGTATAATGCTTCATCTCAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-143-3p(1), mmu-miR-136-5p(1), mmu-miR-182-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCCAACGACAAGTGGCTCAAGCATG
siRNA sets
ATGCTTGAGCCACTTGTCG, TTGAGCCACTTGTCGTTGG, CATGCTTGAGCCACTTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.45174311
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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