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mmu_circArhgap10_724
Basic information of circular RNA
PanCircBase ID:
mmu_circArhgap10_724
mm39_Chr. Position ID:
chr8|78003776|78085263|-
Gene name:
Arhgap10
Transcript:
ENSMUST00000076316.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
20,19,18,17,16,15
Exon/intron offsets:
0,33583,67492,69124,74466,81399
Genomic length:
81487
Exon/intron sizes in nt:
160,151,160,106,59,88
Flanking exon/introns:
chr8:77985838-78003776|chr8:78085263-78091714
Splice length:
724
Other database IDs:
circAtlas: mmu-Arhgap10_0031
circAtlas: hsa-ARHGAP10_0037, CIRCpedia: HSA_CIRCpedia_103652
Human Ortholog IDs:
Mature spliced Sequence:
ATGTAAAAATGTGCAATGAGCTGGACCTGGAGAATTCTGCAGATTGGGAAGTGAAGACAGTAACAAGTGCCTTGAAGCAGTATCTGAGGAGTCTTCCAGAGCCTCTCATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCCCGAGTTAATGCCATCCACTTCTTGGTACACAAACTGCCAGAGAAGAATAAGGAGATGTTGGATATCTTGGTGAAGCATCTAACCAACGTGTCAAGTCACTCGAAGCAGAATCTAATGACAGTGGCGAATTTAGGGGTGGTGTTTGGACCAACTCTGATGAGACCACAGGAAGAGACTGTTGCCGCCATCATGGATTTGAAGTTTCAGAATATCGTTGTAGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGAACCTCGCCTGATACCACATTTGCTGAGCCCACATGCCTGTCAGCATCACCCCCAAACGCTCCACCACGACAGTCCAAGAGACAAGGGCAGAGGACGAAGAGACCAGTGGCCGTGTACAACCTTTGTCTTGAGCTGGAGGAGGGTGACAGTCCCAGCCCTCTCAAGGAGGACCCCCCCAGCAGCAGTCAGGACTCTCTCTCCACCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACCAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CATCTCCCACAACGTCAGCT
60.04
TCTGCAGAATTCTCCAGGTCC
59.44
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCATCTCCCACAACGTCAG
60.39
TGCAGAATTCTCCAGGTCCAG
59.72
140
PCR template sequence:
CCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACCACATGTAAAAATGTGCAATGAGCTGGACCTGGAGAATTCTGCAGATTGGGAAGTGAAGACAGTAACAAGTGCCTTGAAGCAGTATCTGAGGAGTCTTCCAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-132-3p(1), mmu-miR-212-3p(1), mmu-miR-705(1)
siRNAs for circular RNA silencing
Junction sequence
CCACCGCCACCACATGTAAAAATGTG
siRNA sets
TTTTTACATGTGGTGGCGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCARHGAP10_724_ORF_1
1.0591
0.24513448
0.953491329
738
ORF sequence:
ATGCCACCGCCACCACATGTAAAAATGTGCAATGAGCTGGACCTGGAGAATTCTGCAGATTGGGAAGTGAAGACAGTAACAAGTGCCTTGAAGCAGTATCTGAGGAGTCTTCCAGAGCCTCTCATGACCTATGAGTTACACAGAGACTTCATTGTTCCAGCCAAGAGCGGCAGCCCGGAATCCCGAGTTAATGCCATCCACTTCTTGGTACACAAACTGCCAGAGAAGAATAAGGAGATGTTGGATATCTTGGTGAAGCATCTAACCAACGTGTCAAGTCACTCGAAGCAGAATCTAATGACAGTGGCGAATTTAGGGGTGGTGTTTGGACCAACTCTGATGAGACCACAGGAAGAGACTGTTGCCGCCATCATGGATTTGAAGTTTCAGAATATCGTTGTAGAAATCTTAATTGAAAACCATGAAAAGATTTTTCGAACCTCGCCTGATACCACATTTGCTGAGCCCACATGCCTGTCAGCATCACCCCCAAACGCTCCACCACGACAGTCCAAGAGACAAGGGCAGAGGACGAAGAGACCAGTGGCCGTGTACAACCTTTGTCTTGAGCTGGAGGAGGGTGACAGTCCCAGCCCTCTCAAGGAGGACCCCCCCAGCAGCAGTCAGGACTCTCTCTCCACCCCATCTCCCACAACGTCAGCTGCCCATGGGCCTCCTGGACTAGACGGAAACCACCTAGCAGCAGACGGAGGGAGCTGTGGAGATGCCACCGCCACC
Peptide sequence:
MPPPPHVKMCNELDLENSADWEVKTVTSALKQYLRSLPEPLMTYELHRDFIVPAKSGSPESRVNAIHFLVHKLPEKNKEMLDILVKHLTNVSSHSKQNLMTVANLGVVFGPTLMRPQEETVAAIMDLKFQNIVVEILIENHEKIFRTSPDTTFAEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELEEGDSPSPLKEDPPSSSQDSLSTPSPTTSAAHGPPGLDGNHLAADGGSCGDATAT
IRESfinder result
IRESfinder score
0.466360897
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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