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mmu_circAp2a2_406
Basic information of circular RNA
PanCircBase ID:
mmu_circAp2a2_406
mm39_Chr. Position ID:
chr7|141168198|141178808|+
Gene name:
Ap2a2
Transcript:
ENSMUST00000003038.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
2,3,4
Exon/intron offsets:
0,9187,10416
Genomic length:
10610
Exon/intron sizes in nt:
6,91,43,194
Flanking exon/introns:
chr7:141142339-141168198|chr7:141178808-141182145
Splice length:
406
Other database IDs:
circAtlas: mmu-Ap2a2_0004
circAtlas: hsa-AP2A2_0003, CIRCpedia: HSA_CIRCpedia_6177
Human Ortholog IDs:
Mature spliced Sequence:
GTAAAAGTAAAGAAGCTGAAATAAAGAGAATAAACAAAGAACTGGCAAATATTAGATCCAAATTTAAAGGTGACAAGGCTCTTGATGGCTACAGTAAAAAGAAGTATGTCTGCAAATTGCTCTTCATCTTTCTCCTTGGTCATGACATTGACTTTGGACACATGGAAGCTGTGAATCTTCTGAGCTCAAACAGATACACGGAAAAGCAGATTGGCTACCTTTTCATCTCTGTATTGGTGAACTCGAATAGTGAACTGATCCGGTTGATTAACAATGCCATCAAGAATGACCTGGCCAGCCGCAATCCTACGTTTATGGGTCTCGCCCTGCACTGCATTGCCAATGTGGGTAGCCGTGAGATGGCGGAGGCCTTCGCCGGAGAGATCCCCAAGATCCTCGTGGCAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCACTGCATTGCCAATGT
60.04
AGCCATCAAGAGCCTTGTCA
59.31
170
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCACTGCATTGCCAATGT
60.04
GCCATCAAGAGCCTTGTCAC
59.19
169
PCR template sequence:
CTACGTTTATGGGTCTCGCCCTGCACTGCATTGCCAATGTGGGTAGCCGTGAGATGGCGGAGGCCTTCGCCGGAGAGATCCCCAAGATCCTCGTGGCAGGGTAAAAGTAAAGAAGCTGAAATAAAGAGAATAAACAAAGAACTGGCAAATATTAGATCCAAATTTAAAGGTGACAAGGCTCTTGATGGCTACAGTAAAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-152-3p(1), mmu-miR-143-3p(1), mmu-miR-182-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCTCGTGGCAGGGTAAAAGTAAAGA
siRNA sets
TCTTTACTTTTACCCTGCC,TTTACTTTTACCCTGCCAC,TTACTTTTACCCTGCCACG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAP2A2_406_ORF_1
1.0178
0.203998209
0.792469549
537
ORF sequence:
ATGCCATCAAGAATGACCTGGCCAGCCGCAATCCTACGTTTATGGGTCTCGCCCTGCACTGCATTGCCAATGTGGGTAGCCGTGAGATGGCGGAGGCCTTCGCCGGAGAGATCCCCAAGATCCTCGTGGCAGGGTAAAAGTAAAGAAGCTGAAATAAAGAGAATAAACAAAGAACTGGCAAATATTAGATCCAAATTTAAAGGTGACAAGGCTCTTGATGGCTACAGTAAAAAGAAGTATGTCTGCAAATTGCTCTTCATCTTTCTCCTTGGTCATGACATTGACTTTGGACACATGGAAGCTGTGAATCTTCTGAGCTCAAACAGATACACGGAAAAGCAGATTGGCTACCTTTTCATCTCTGTATTGGTGAACTCGAATAGTGAACTGATCCGGTTGATTAACAATGCCATCAAGAATGACCTGGCCAGCCGCAATCCTACGTTTATGGGTCTCGCCCTGCACTGCATTGCCAATGTGGGTAGCCGTGAGATGGCGGAGGCCTTCGCCGGAGAGATCCCCAAGATCCTCGTGGCA
Peptide sequence:
MPSRMTWPAAILRLWVSPCTALPMWVAVRWRRPSPERSPRSSWQGKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVA
IRESfinder result
IRESfinder score
0.368059316
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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