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mmu_circAno6_715
Basic information of circular RNA
PanCircBase ID:
mmu_circAno6_715
mm39_Chr. Position ID:
chr15|95839090|95847837|+
Gene name:
Ano6
Transcript:
ENSMUST00000071874.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
11,12,13,14,15
Exon/intron offsets:
0,2188,7062,8281,8649
Genomic length:
8747
Exon/intron sizes in nt:
143,78,226,170,98
Flanking exon/introns:
chr15:95829724-95839090|chr15:95847837-95853771
Splice length:
715
Other database IDs:
CIRCpedia: MMU_CIRCpedia_36830, circAtlas: mmu-Ano6_0004
circBase: hsa_circ_0098602, circAtlas: hsa-ANO6_0004, CIRCpedia: HSA_CIRCpedia_149865
Human Ortholog IDs:
Mature spliced Sequence:
TTACATTGTTTTTGGAGTTTTGGAAGCGGCGCCAGGCAGAGCTCGAATATGAATGGGACACCGTTGAGCTACAGCAAGAGGAACAGGCCCGGCCAGAGTATGAGGCCCAGTGCAATCACGTGGTGATAAACGAGATCACTCAGGAGGAGGAGCGCATCCCATTTACCACCTGTGGGAAGTGCATCCGGGTCACGCTGTGTGCGAGCGCCGTCTTCTTCTGGATCCTGCTCATCATCGCCTCTGTGATCGGGATCATTGTCTACAGGCTGTCCGTGTTCATCGTATTTTCCACAACGCTCCCCAAGAACCCCAACGGGACAGACCCGATCCAGAAGTACCTGACCCCACAGATGGCCACATCCATCACAGCCTCCATCATCAGCTTCATCATCATCATGATCCTCAACACGATCTACGAGAAGGTGGCCATCATGATCACCAACTTCGAGCTCCCAAGGACCCAGACGGATTATGAGAACAGCCTGACCATGAAGATGTTCTTGTTCCAGTTTGTCAACTATTACTCCTCATGCTTCTACATCGCATTCTTCAAGGGCAAATTCGTGGGCTATCCCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGGGGGGCTGCCTCCTTGAACTGACCACACAGCTGACGATCATCATGGGGGGAAAGGCAATCTGGAACAACATACAAGAAGTCTTGCTCCC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGACCACACAGCTGACGAT
60.04
TTGCTGTAGCTCAACGGTGT
59.89
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACCACACAGCTGACGATCA
60.04
TTGCTGTAGCTCAACGGTGT
59.89
146
PCR template sequence:
AGTGTGACCCGGGGGGCTGCCTCCTTGAACTGACCACACAGCTGACGATCATCATGGGGGGAAAGGCAATCTGGAACAACATACAAGAAGTCTTGCTCCCTTACATTGTTTTTGGAGTTTTGGAAGCGGCGCCAGGCAGAGCTCGAATATGAATGGGACACCGTTGAGCTACAGCAAGAGGAACAGGCCCGGCCAGAGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-92a-3p(1), mmu-miR-25-3p(1), mmu-miR-433-3p(1), mmu-miR-127-5p(1), mmu-miR-5099(1)
siRNAs for circular RNA silencing
Junction sequence
AAGTCTTGCTCCCTTACATTGTTTTT
siRNA sets
AAAAACAATGTAAGGGAGC, AAAACAATGTAAGGGAGCA, AATGTAAGGGAGCAAGACT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANO6_715_ORF_1
1.2604
0.402239976
0.8482784
417
ORF sequence:
ATGGCCACATCCATCACAGCCTCCATCATCAGCTTCATCATCATCATGATCCTCAACACGATCTACGAGAAGGTGGCCATCATGATCACCAACTTCGAGCTCCCAAGGACCCAGACGGATTATGAGAACAGCCTGACCATGAAGATGTTCTTGTTCCAGTTTGTCAACTATTACTCCTCATGCTTCTACATCGCATTCTTCAAGGGCAAATTCGTGGGCTATCCCGGGGACCCAGTGTACTTGCTGGGCAAATACAGAAGCGAAGAGTGTGACCCGGGGGGCTGCCTCCTTGAACTGACCACACAGCTGACGATCATCATGGGGGGAAAGGCAATCTGGAACAACATACAAGAAGTCTTGCTCCCTTACATTGTTTTTGGAGTTTTGGAAGCGGCGCCAGGCAGAGCTCGAATATGA
Peptide sequence:
MATSITASIISFIIIMILNTIYEKVAIMITNFELPRTQTDYENSLTMKMFLFQFVNYYSSCFYIAFFKGKFVGYPGDPVYLLGKYRSEECDPGGCLLELTTQLTIIMGGKAIWNNIQEVLLPYIVFGVLEAAPGRARI
IRESfinder result
IRESfinder score
0.442834843
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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