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mmu_circAnkrd17_6778
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_6778
mm39_Chr. Position ID:
chr5|90386797|90451924|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
29
Exon/intron indexes:
30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,3925,11436,13928,14556,15701,19495,21146,24320,25052,25688,26492,29393,29699,39304,43912,46102,46549,46897,48310,49645,50299,52009,54263,56646,59048,59601,61050,64973
Genomic length:
65127
Exon/intron sizes in nt:
21,31,63,11,50,15,64,40,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr5:90382008-90386797|chr5:90451924-90513525
Splice length:
6778
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_137450
Human Ortholog IDs:
Mature spliced Sequence:
GTGGAGTCTTTCATTTTGGACCAGGATGATTTGGAGAATCCAATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCAGGACAGTAGATCCAGAGACGCAGGCTCGACTGGAAGCTTTACTAGAAGCTGCAGGAATAGGCAAGTTATCGACGGCGGATGGTAAAGCCTTTGCAGACCCTGAAGTGCTCCGCAGGTTAACATCGTCTGTCAGTTGTGCGTTGGATGAAGCTGCTGCTGCACTTACCCGGATGAGAGCTGAGAGCACAGCAAATGCAGGGCAGTCGGACAACCGCAGTCTGGCAGAAGCGTGTTCAGAAGGAGATGTAAATGCTGTGCGGAAACTACTCATTGAAGGTCGGAGTGTGAATGAGCACACCGAGGAAGGGGAGAGCCTCCTTTGTCTCGCTTGTTCTGCTGGGTACTATGAGCTTGCACAGGTTTTATTGGCAATGCACGCAAATGTGGAAGACAGGGGAATCAAAGGTGACATCACACCTTTAATGGCTGCTGCTAATGGAGGACATGTCAAAATCGTGAAGTTGCTGCTAGCTCATAAAGCTGATGTCAATGCACAGTCTTCAACAGGCAACACAGCTCTCACCTATGCTTGTGCTGGAGGCTACGTAGATGTTGTAAAGGTGCTCTTGGAATCCGGTGCTAGTATTGAGGACCATAATGAGAATGGTCACACACCTCTTATGGAAGCTGGAAGTGCTGGGCATGTGGAAGTAGCCAGATTGCTGCTAGAAAATGGAGCTGGCATCAATACGCATTCCAATGAATTTAAAGAGAGTGCCCTTACATTAGCTTGTTATAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAGGAGCAAATGTGAATCGAACCACAGCTAATAATGATCATACTGTACTGTCCCTGGCTTGTGCAGGAGGTCATTTGGCAGTGGTAGAACTACTTTTGGCTCATGGAGCAGACCCTACTCACCGTTTAAAAGATGGCTCAACCATGTTGATAGAAGCAGCAAAGGGTGGCCATACGAGTGTTGTTTGCTATCTTTTAGACTATCCCAATAATCTACTTGCAGCCCCTCCACCAGATGTCACTCAGCTAACTCCCCCATCCCATGATTTAAATAGGGCACCTCGAGTACCAGTTCAAGCACTGCCCATGGTTGTCCCACCTCAGGAGCCTGACAAACCACCTGCCAACCTTGCTGCTACTCTTCCCGTTAGGAGTAAAGCTGCTTCTAAACAAAAGTCCAACAGCCATTTGCCAGCAAACAGCCAGGATGTACAGGGTTACATCACCAATCAGTCTCCAGAGAGCATTGTAGAAGAGGCTCAGGGAAAGTTAACAGAACTGGAACAGAGGATAAAAGAAGCCATAGAAAAAAATGCACAGCTGCAGTCCTTGGAGCTGGCTCATGCTGACCAACTCACCAAGGAGAAGATCGAGGAGCTGAACAAAACGAGGGAGGAACAAATTCAGAAGAAGCAAAAGATTCTGGAGGAGCTGCAGAAAGTAGAGCGAGAGCTACAACTGAAAACTCAGCAGCAGCTTAAAAAACAGTATCTAGAAGTTAAAGCTCAACGAATTCAGCTTCAGCAGCAGCAGCAACAGTCTTGCCAGCATCTGGGACTATTTACTTCTGTTGGGGTTGGAGAGCAGCTTTCCGAGGGAGACTATGCACGGTTACAGCAAGTGGATCCTGTTTTGCTTAAAGATGAACCCCAGCAGACTGCTGCTCAGATGGGTTTTGCACCAATCCAGCCTCTGGCGATGCCTCAAGCTTTGCCTCTGGCAACGGGTCCCTTGCCTCCAGGGTCCATCGCAAATCTTACAGAACTTCAAGGAGTGATAGTTGGACAGCCAGTACTGGGCCAAGCACAGTTGGCAGGGCTGGGGCAAGGAATTCTCACTGAAACACAACAAGGGTTAATGGTAGCCAGCCCTGCTCAGACCCTCAATGACACGCTGGATGACATCATGGCAGCAGTCAGTGGAAGAGCATCTGCAATGTCAAACACTCCTACCCACAGTATCGCTGCTTCTGTTTCCCAACCTCAGACTCCAACTCCAAGTCCCATCATCTCTCCTTCAGCCATGCTACCTATCTACCCTGCCATTGATATTGATGCACAGACTGAGAGTAATCATGATACTGCACTAACACTTGCCTGTGCTGGTGGCCATGAGGAACTGGTACAAACACTACTAGAGAGAGGAGCTAGTATTGAACATCGAGACAAGAAAGGTTTTACTCCACTCATCTTGGCTGCTACAGCTGGTCATGTTGGTGTTGTAGAGATATTGCTGGACAATGGTGCAGACATTGAAGCCCAGTCAGAAAGAACCAAGGACACACCACTGTCCTTGGCTTGTTCTGGGGGCAGGCAGGAGGTGGTGGAGTTGTTGTTAGCTCGCGGTGCAAATAAAGAACACAGGAATGTTTCTGATTATACACCTCTAAGCCTGGCTGCTTCTGGTGGCTATGTGAACATCATCAAAATACTGCTAAATGCAGGAGCTGAGATCAATTCAAGAACTGGCAGCAAATTGGGCATTTCTCCACTGATGTTGGCAGCTATGAATGGGCATACAGCTGCAGTTAAGCTCCTTTTAGACATGGGCTCTGACATAAATGCTCAGATAGAAACCAATCGGAACACTGCCCTTACATTAGCCTGCTTCCAAGGAAGAACTGAAGTGGTTAGCCTTCTGCTTGATCGAAAAGCAAATGTTGAACATAGGGCTAAGACTGGCCTCACACCATTAATGGAAGCAGCGTCTGGTGGTTATGCAGAGGTGGGCCGAGTTCTTTTGGATAAAGGTGCTGATGTGAATGCCCCTCCAGTGCCCTCCTCCAGAGACACAGCTTTAACCATAGCCGCAGATAAAGGGCATTATAAATTTTGTGAACTTCTTATTGGCAAGGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCAACTGCAGATGTAGATGCAGCAGATAACCGCAAGATAACTCCGCTCATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAGGGGTGGCACTGAATCAACAAGACAAGCAACTCAGTTGATCAATGCTTTGATCAAGGATCCAGACAAAGAAATTGATGAACTTATTCCAAAGAATCGTTTGAAAAGCTCCACAGCAAATTCCAAAATCGGGTCCTCAGCACCTACCACCACTGCTGCTAACAGTTCCTTAATGGGGATCAAAATGACAACTGTAGCTCTGTCGTCGACATCTCAGACTGCCACTGCACTCACCGTTCCTGCCATCTCTTCTGCATCCACTCACAAAACCATTAAGAACCCTGTGAATAATGTGAGGCCTGGGTTTCCAGTTTCTCTTCCATTAGCATATCCTCCTCCACAGTTTGCACACGCTTTGCTTGCTGCTCAGACTTTCCAGCAGATCCGTCCACCACGGTTGCCCATGACCCACTTTGGAGGTACTTTCCCACCAGCTCAGTCCACTTGGGGTCCTTTTCCTGTCAGGCCTTTGAGCCCTGCCAGAGCTACTAACTCGCCTAAGCCTCACATGGTGCCTCGCCATAGCAATCAGAATAGCAGTGGTTCTCAGGTGAATTCAGCAGGTTCTCTAACTTCAAGTCCAACAACTACAGCCAGTTCATCAGCTTCAGCGGTGCCTGGTACAACTTCAAATGGCAGTCCAAGTTCTCCTTCAGTCAGAAGGCAGCTTTTTGTCACAGTTGTGAAGACATCCAATGCCACAACCACAACAGTCACAACTACAGCAAGCAACAACAGCACCGCACCCACAAACGCCACATATCCTATGCCTACTGCCAAAGAACACTATCCAGTATCATCCCCATCTTCCCCATCACCACCAGCCCAGCCAGGAGGGGTTTCTAGAAACAGCCCTTTGGATTGTGGATCAGCATCCCCAAATAAAGGGGCATCTGCTTCCGAACAGGAAGCAAGCAGTCCACCAGTAGTAGAACCTGCAAATAGCAGACCCCCACACAGCAGCAGTTCTTCTGGGAGCTCATCAGGTCATTCCACTCAGCAGCAGCCTCCGGGATCTGTTCCTCAGGAGCCAAGACCCCCTCTTCAGCAGTCTCAGGTTCCTTCCCCGGATGTGAGAATGACTGTTCCTCCTACAGCAACAAGTTCTGCTCCAGTGGCGGTGCCTTCTACTGCGCCTGTGACGTACCCTATGCCTCAGACACAAATGGGATGCTCCCAGCCTCCTAAAATGGAAGCCCCTGCTATTAGACCACCCTCTCATGCCACAGCTGCCCCTCACAAGACTCCAGCTCCAGTGCAGAGTTCATCTGCTTCAGTCCTCAATGTCAATCACATTAAAAGACCTCATAGTGTCCCCTCCTCTGTCCAGCTACCTTCGACCTTAAGTACACAAAGTGCTTGTCAGAATTCAGTACATCCAGCAAATAAGCCTGTTGCTCCCAACTTCAGTGCCCCATTACCATTTGGGCCCTTTAGCACATTGTTTGAAAACAACCCTACTAATGCTCATGCCTTCTGGGGAGGACCTGTTGTTTCATCTCAGTCAACACCAGAATCTATGCTGTCAGGAAAATCCTCGTATTTGCCAAATTCAGATCCTTTACATCAGTCAGATACTTCCAAAGCACCAGGTTTTAGGCCACCATTACAGAGACCTGCTCCAAGTCCCTCAGGTATTGTCAACATGGACACACCATATGGTTCTGTAACACCTTCTTCTACACATTTGGGAAACTTTGCCTCAAGTCTTTCAGGAGGTCAGATGTATGGGCCTGGAGCACCTCTTGGAGGAGCACCCCTTGGAGGAGCACCTACTGCTGCTAACTTTAACAGACAGCATTTTTCCCCACTTAGTTTGTTGACTCCATGTTCATCAGCATCAAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTGGAGGAGCACCTACTGC
60.11
CGTCAGCAGTGCCTGATAGA
59.54
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTTGGAGGAGCACCTACTGC
60.11
CCGTCAGCAGTGCCTGATAG
60.53
177
PCR template sequence:
GGAGGAGCACCCCTTGGAGGAGCACCTACTGCTGCTAACTTTAACAGACAGCATTTTTCCCCACTTAGTTTGTTGACTCCATGTTCATCAGCATCAAATGGTGGAGTCTTTCATTTTGGACCAGGATGATTTGGAGAATCCAATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
57
Interacting miRNAs (#binding sites)
mmu-miR-322-5p(7), mmu-miR-15a-5p(4), mmu-miR-16-5p(3), mmu-miR-15b-5p(3), mmu-miR-22-3p(3), mmu-miR-34a-5p(2), mmu-miR-33-5p(2), mmu-miR-411-3p(2), mmu-miR-342-5p(2), mmu-miR-1187(2), mmu-miR-5101(2), mmu-miR-210-3p(1), mmu-miR-23b-3p(1), mmu-miR-93-5p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-34c-5p(1), mmu-miR-19b-3p(1), mmu-miR-101a-3p(1), mmu-miR-122-5p(1), mmu-miR-146a-5p(1), mmu-miR-19a-3p(1), mmu-miR-222-3p(1), mmu-miR-320-3p(1), mmu-miR-23a-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-339-5p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-181b-5p(1), mmu-miR-495-3p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-153-3p(1), mmu-miR-125a-5p(1), mmu-miR-382-3p(1), mmu-miR-127-5p(1), mmu-miR-199b-3p(1), mmu-miR-218-5p(1), mmu-miR-199a-3p(1), mmu-miR-511-3p(1), mmu-miR-370-3p(1), mmu-miR-362-5p(1), mmu-miR-34b-5p(1), mmu-miR-27a-5p(1), mmu-miR-499-5p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-190b-5p(1), mmu-miR-335-3p(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-1904(1), mmu-miR-146b-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCAGCATCAAATGGTGGAGTCTTTCA
siRNA sets
GAAAGACTCCACCATTTGA, AAAGACTCCACCATTTGAT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_6778_ORF_1
1.134
0.109338399
1
6780
ORF sequence:
ATGGTGGAGTCTTTCATTTTGGACCAGGATGATTTGGAGAATCCAATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCAGGACAGTAGATCCAGAGACGCAGGCTCGACTGGAAGCTTTACTAGAAGCTGCAGGAATAGGCAAGTTATCGACGGCGGATGGTAAAGCCTTTGCAGACCCTGAAGTGCTCCGCAGGTTAACATCGTCTGTCAGTTGTGCGTTGGATGAAGCTGCTGCTGCACTTACCCGGATGAGAGCTGAGAGCACAGCAAATGCAGGGCAGTCGGACAACCGCAGTCTGGCAGAAGCGTGTTCAGAAGGAGATGTAAATGCTGTGCGGAAACTACTCATTGAAGGTCGGAGTGTGAATGAGCACACCGAGGAAGGGGAGAGCCTCCTTTGTCTCGCTTGTTCTGCTGGGTACTATGAGCTTGCACAGGTTTTATTGGCAATGCACGCAAATGTGGAAGACAGGGGAATCAAAGGTGACATCACACCTTTAATGGCTGCTGCTAATGGAGGACATGTCAAAATCGTGAAGTTGCTGCTAGCTCATAAAGCTGATGTCAATGCACAGTCTTCAACAGGCAACACAGCTCTCACCTATGCTTGTGCTGGAGGCTACGTAGATGTTGTAAAGGTGCTCTTGGAATCCGGTGCTAGTATTGAGGACCATAATGAGAATGGTCACACACCTCTTATGGAAGCTGGAAGTGCTGGGCATGTGGAAGTAGCCAGATTGCTGCTAGAAAATGGAGCTGGCATCAATACGCATTCCAATGAATTTAAAGAGAGTGCCCTTACATTAGCTTGTTATAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGAACATGAGTCAGAAGGTGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCGGGTCATGTTTGCACAGTCCAGTTCTTAATTAGCAAAGGAGCAAATGTGAATCGAACCACAGCTAATAATGATCATACTGTACTGTCCCTGGCTTGTGCAGGAGGTCATTTGGCAGTGGTAGAACTACTTTTGGCTCATGGAGCAGACCCTACTCACCGTTTAAAAGATGGCTCAACCATGTTGATAGAAGCAGCAAAGGGTGGCCATACGAGTGTTGTTTGCTATCTTTTAGACTATCCCAATAATCTACTTGCAGCCCCTCCACCAGATGTCACTCAGCTAACTCCCCCATCCCATGATTTAAATAGGGCACCTCGAGTACCAGTTCAAGCACTGCCCATGGTTGTCCCACCTCAGGAGCCTGACAAACCACCTGCCAACCTTGCTGCTACTCTTCCCGTTAGGAGTAAAGCTGCTTCTAAACAAAAGTCCAACAGCCATTTGCCAGCAAACAGCCAGGATGTACAGGGTTACATCACCAATCAGTCTCCAGAGAGCATTGTAGAAGAGGCTCAGGGAAAGTTAACAGAACTGGAACAGAGGATAAAAGAAGCCATAGAAAAAAATGCACAGCTGCAGTCCTTGGAGCTGGCTCATGCTGACCAACTCACCAAGGAGAAGATCGAGGAGCTGAACAAAACGAGGGAGGAACAAATTCAGAAGAAGCAAAAGATTCTGGAGGAGCTGCAGAAAGTAGAGCGAGAGCTACAACTGAAAACTCAGCAGCAGCTTAAAAAACAGTATCTAGAAGTTAAAGCTCAACGAATTCAGCTTCAGCAGCAGCAGCAACAGTCTTGCCAGCATCTGGGACTATTTACTTCTGTTGGGGTTGGAGAGCAGCTTTCCGAGGGAGACTATGCACGGTTACAGCAAGTGGATCCTGTTTTGCTTAAAGATGAACCCCAGCAGACTGCTGCTCAGATGGGTTTTGCACCAATCCAGCCTCTGGCGATGCCTCAAGCTTTGCCTCTGGCAACGGGTCCCTTGCCTCCAGGGTCCATCGCAAATCTTACAGAACTTCAAGGAGTGATAGTTGGACAGCCAGTACTGGGCCAAGCACAGTTGGCAGGGCTGGGGCAAGGAATTCTCACTGAAACACAACAAGGGTTAATGGTAGCCAGCCCTGCTCAGACCCTCAATGACACGCTGGATGACATCATGGCAGCAGTCAGTGGAAGAGCATCTGCAATGTCAAACACTCCTACCCACAGTATCGCTGCTTCTGTTTCCCAACCTCAGACTCCAACTCCAAGTCCCATCATCTCTCCTTCAGCCATGCTACCTATCTACCCTGCCATTGATATTGATGCACAGACTGAGAGTAATCATGATACTGCACTAACACTTGCCTGTGCTGGTGGCCATGAGGAACTGGTACAAACACTACTAGAGAGAGGAGCTAGTATTGAACATCGAGACAAGAAAGGTTTTACTCCACTCATCTTGGCTGCTACAGCTGGTCATGTTGGTGTTGTAGAGATATTGCTGGACAATGGTGCAGACATTGAAGCCCAGTCAGAAAGAACCAAGGACACACCACTGTCCTTGGCTTGTTCTGGGGGCAGGCAGGAGGTGGTGGAGTTGTTGTTAGCTCGCGGTGCAAATAAAGAACACAGGAATGTTTCTGATTATACACCTCTAAGCCTGGCTGCTTCTGGTGGCTATGTGAACATCATCAAAATACTGCTAAATGCAGGAGCTGAGATCAATTCAAGAACTGGCAGCAAATTGGGCATTTCTCCACTGATGTTGGCAGCTATGAATGGGCATACAGCTGCAGTTAAGCTCCTTTTAGACATGGGCTCTGACATAAATGCTCAGATAGAAACCAATCGGAACACTGCCCTTACATTAGCCTGCTTCCAAGGAAGAACTGAAGTGGTTAGCCTTCTGCTTGATCGAAAAGCAAATGTTGAACATAGGGCTAAGACTGGCCTCACACCATTAATGGAAGCAGCGTCTGGTGGTTATGCAGAGGTGGGCCGAGTTCTTTTGGATAAAGGTGCTGATGTGAATGCCCCTCCAGTGCCCTCCTCCAGAGACACAGCTTTAACCATAGCCGCAGATAAAGGGCATTATAAATTTTGTGAACTTCTTATTGGCAAGGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCAACTGCAGATGTAGATGCAGCAGATAACCGCAAGATAACTCCGCTCATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAGGGGTGGCACTGAATCAACAAGACAAGCAACTCAGTTGATCAATGCTTTGATCAAGGATCCAGACAAAGAAATTGATGAACTTATTCCAAAGAATCGTTTGAAAAGCTCCACAGCAAATTCCAAAATCGGGTCCTCAGCACCTACCACCACTGCTGCTAACAGTTCCTTAATGGGGATCAAAATGACAACTGTAGCTCTGTCGTCGACATCTCAGACTGCCACTGCACTCACCGTTCCTGCCATCTCTTCTGCATCCACTCACAAAACCATTAAGAACCCTGTGAATAATGTGAGGCCTGGGTTTCCAGTTTCTCTTCCATTAGCATATCCTCCTCCACAGTTTGCACACGCTTTGCTTGCTGCTCAGACTTTCCAGCAGATCCGTCCACCACGGTTGCCCATGACCCACTTTGGAGGTACTTTCCCACCAGCTCAGTCCACTTGGGGTCCTTTTCCTGTCAGGCCTTTGAGCCCTGCCAGAGCTACTAACTCGCCTAAGCCTCACATGGTGCCTCGCCATAGCAATCAGAATAGCAGTGGTTCTCAGGTGAATTCAGCAGGTTCTCTAACTTCAAGTCCAACAACTACAGCCAGTTCATCAGCTTCAGCGGTGCCTGGTACAACTTCAAATGGCAGTCCAAGTTCTCCTTCAGTCAGAAGGCAGCTTTTTGTCACAGTTGTGAAGACATCCAATGCCACAACCACAACAGTCACAACTACAGCAAGCAACAACAGCACCGCACCCACAAACGCCACATATCCTATGCCTACTGCCAAAGAACACTATCCAGTATCATCCCCATCTTCCCCATCACCACCAGCCCAGCCAGGAGGGGTTTCTAGAAACAGCCCTTTGGATTGTGGATCAGCATCCCCAAATAAAGGGGCATCTGCTTCCGAACAGGAAGCAAGCAGTCCACCAGTAGTAGAACCTGCAAATAGCAGACCCCCACACAGCAGCAGTTCTTCTGGGAGCTCATCAGGTCATTCCACTCAGCAGCAGCCTCCGGGATCTGTTCCTCAGGAGCCAAGACCCCCTCTTCAGCAGTCTCAGGTTCCTTCCCCGGATGTGAGAATGACTGTTCCTCCTACAGCAACAAGTTCTGCTCCAGTGGCGGTGCCTTCTACTGCGCCTGTGACGTACCCTATGCCTCAGACACAAATGGGATGCTCCCAGCCTCCTAAAATGGAAGCCCCTGCTATTAGACCACCCTCTCATGCCACAGCTGCCCCTCACAAGACTCCAGCTCCAGTGCAGAGTTCATCTGCTTCAGTCCTCAATGTCAATCACATTAAAAGACCTCATAGTGTCCCCTCCTCTGTCCAGCTACCTTCGACCTTAAGTACACAAAGTGCTTGTCAGAATTCAGTACATCCAGCAAATAAGCCTGTTGCTCCCAACTTCAGTGCCCCATTACCATTTGGGCCCTTTAGCACATTGTTTGAAAACAACCCTACTAATGCTCATGCCTTCTGGGGAGGACCTGTTGTTTCATCTCAGTCAACACCAGAATCTATGCTGTCAGGAAAATCCTCGTATTTGCCAAATTCAGATCCTTTACATCAGTCAGATACTTCCAAAGCACCAGGTTTTAGGCCACCATTACAGAGACCTGCTCCAAGTCCCTCAGGTATTGTCAACATGGACACACCATATGGTTCTGTAACACCTTCTTCTACACATTTGGGAAACTTTGCCTCAAGTCTTTCAGGAGGTCAGATGTATGGGCCTGGAGCACCTCTTGGAGGAGCACCCCTTGGAGGAGCACCTACTGCTGCTAACTTTAACAGACAGCATTTTTCCCCACTTAGTTTGTTGACTCCATGTTCATCAGCATCAAAT
Peptide sequence:
MVESFILDQDDLENPMLETASKLLLSGTADGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAESTANAGQSDNRSLAEACSEGDVNAVRKLLIEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGIKGDITPLMAAANGGHVKIVKLLLAHKADVNAQSSTGNTALTYACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAGSAGHVEVARLLLENGAGINTHSNEFKESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHVCTVQFLISKGANVNRTTANNDHTVLSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTSVVCYLLDYPNNLLAAPPPDVTQLTPPSHDLNRAPRVPVQALPMVVPPQEPDKPPANLAATLPVRSKAASKQKSNSHLPANSQDVQGYITNQSPESIVEEAQGKLTELEQRIKEAIEKNAQLQSLELAHADQLTKEKIEELNKTREEQIQKKQKILEELQKVERELQLKTQQQLKKQYLEVKAQRIQLQQQQQQSCQHLGLFTSVGVGEQLSEGDYARLQQVDPVLLKDEPQQTAAQMGFAPIQPLAMPQALPLATGPLPPGSIANLTELQGVIVGQPVLGQAQLAGLGQGILTETQQGLMVASPAQTLNDTLDDIMAAVSGRASAMSNTPTHSIAASVSQPQTPTPSPIISPSAMLPIYPAIDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVVEILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIGKGAHIDVRNKKGNTPLWLAANGGHLDVVQLLVQATADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLKKCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALAAKREKRKEKRRKKKEEQRRKLEEIEAKNKENFELQAAQEKEKLKVEEEPEVLTEPPSATTTTTIGISATWTTLAGSHGKRNNTITTTSSKRKNRKNKITPENVQIIFDDPLPISYSQPEKVNGESKSSSTSESGDSDNMRISSCSDESSNSNSSRKSNNHASAVVTTTMASKKQPSVLVTFPKEERKSVSGKASIKLSETVNEGTSNSLSTCTKSGPSPLSSPNGKLTVASPKRGPKREEGWKEVVRRSKKVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQLINALIKDPDKEIDELIPKNRLKSSTANSKIGSSAPTTTAANSSLMGIKMTTVALSSTSQTATALTVPAISSASTHKTIKNPVNNVRPGFPVSLPLAYPPPQFAHALLAAQTFQQIRPPRLPMTHFGGTFPPAQSTWGPFPVRPLSPARATNSPKPHMVPRHSNQNSSGSQVNSAGSLTSSPTTTASSSASAVPGTTSNGSPSSPSVRRQLFVTVVKTSNATTTTVTTTASNNSTAPTNATYPMPTAKEHYPVSSPSSPSPPAQPGGVSRNSPLDCGSASPNKGASASEQEASSPPVVEPANSRPPHSSSSSGSSSGHSTQQQPPGSVPQEPRPPLQQSQVPSPDVRMTVPPTATSSAPVAVPSTAPVTYPMPQTQMGCSQPPKMEAPAIRPPSHATAAPHKTPAPVQSSSASVLNVNHIKRPHSVPSSVQLPSTLSTQSACQNSVHPANKPVAPNFSAPLPFGPFSTLFENNPTNAHAFWGGPVVSSQSTPESMLSGKSSYLPNSDPLHQSDTSKAPGFRPPLQRPAPSPSGIVNMDTPYGSVTPSSTHLGNFASSLSGGQMYGPGAPLGGAPLGGAPTAANFNRQHFSPLSLLTPCSSASN
IRESfinder result
IRESfinder score
0.54093362
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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