top of page
mmu_circAnkrd17_2093
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_2093
mm39_Chr. Position ID:
chr5|90398233|90416608|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
28,27,26,25,24,23,22,21,20,19,18,17
Exon/intron offsets:
0,2492,3120,4265,8059,9710,12884,13616,14252,15056,17957,18263
Genomic length:
18375
Exon/intron sizes in nt:
15,01,56,44,81,72,11,70,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr5:90392353-90398233|chr5:90416608-90426101
Splice length:
2093
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_341868
Human Ortholog IDs:
Mature spliced Sequence:
ACTGAGAGTAATCATGATACTGCACTAACACTTGCCTGTGCTGGTGGCCATGAGGAACTGGTACAAACACTACTAGAGAGAGGAGCTAGTATTGAACATCGAGACAAGAAAGGTTTTACTCCACTCATCTTGGCTGCTACAGCTGGTCATGTTGGTGTTGTAGAGATATTGCTGGACAATGGTGCAGACATTGAAGCCCAGTCAGAAAGAACCAAGGACACACCACTGTCCTTGGCTTGTTCTGGGGGCAGGCAGGAGGTGGTGGAGTTGTTGTTAGCTCGCGGTGCAAATAAAGAACACAGGAATGTTTCTGATTATACACCTCTAAGCCTGGCTGCTTCTGGTGGCTATGTGAACATCATCAAAATACTGCTAAATGCAGGAGCTGAGATCAATTCAAGAACTGGCAGCAAATTGGGCATTTCTCCACTGATGTTGGCAGCTATGAATGGGCATACAGCTGCAGTTAAGCTCCTTTTAGACATGGGCTCTGACATAAATGCTCAGATAGAAACCAATCGGAACACTGCCCTTACATTAGCCTGCTTCCAAGGAAGAACTGAAGTGGTTAGCCTTCTGCTTGATCGAAAAGCAAATGTTGAACATAGGGCTAAGACTGGCCTCACACCATTAATGGAAGCAGCGTCTGGTGGTTATGCAGAGGTGGGCCGAGTTCTTTTGGATAAAGGTGCTGATGTGAATGCCCCTCCAGTGCCCTCCTCCAGAGACACAGCTTTAACCATAGCCGCAGATAAAGGGCATTATAAATTTTGTGAACTTCTTATTGGCAAGGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCAACTGCAGATGTAGATGCAGCAGATAACCGCAAGATAACTCCGCTCATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGAATGTACTGGTGCAC
60.04
TGTACCAGTTCCTCATGGCC
59.38
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGAATGTACTGGTGCAC
60.04
TTGTACCAGTTCCTCATGGCC
60
141
PCR template sequence:
GAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAGACTGAGAGTAATCATGATACTGCACTAACACTTGCCTGTGCTGGTGGCCATGAGGAACTGGTACAAACACTACTAGAGAGAGGAGCTAGTATTGAACATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-34a-5p(1), mmu-miR-320-3p(1), mmu-miR-138-5p(1), mmu-miR-181b-5p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-382-3p(1), mmu-miR-22-3p(1), mmu-miR-411-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-27a-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TAATAACTATAAGACTGAGAGTAATC
siRNA sets
ATTACTCTCAGTCTTATAG, TTACTCTCAGTCTTATAGT, TACTCTCAGTCTTATAGTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_2093_ORF_1
1.0282
0.127344558
0.999906756
1689
ORF sequence:
ATGTTGGCAGCTATGAATGGGCATACAGCTGCAGTTAAGCTCCTTTTAGACATGGGCTCTGACATAAATGCTCAGATAGAAACCAATCGGAACACTGCCCTTACATTAGCCTGCTTCCAAGGAAGAACTGAAGTGGTTAGCCTTCTGCTTGATCGAAAAGCAAATGTTGAACATAGGGCTAAGACTGGCCTCACACCATTAATGGAAGCAGCGTCTGGTGGTTATGCAGAGGTGGGCCGAGTTCTTTTGGATAAAGGTGCTGATGTGAATGCCCCTCCAGTGCCCTCCTCCAGAGACACAGCTTTAACCATAGCCGCAGATAAAGGGCATTATAAATTTTGTGAACTTCTTATTGGCAAGGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCAACTGCAGATGTAGATGCAGCAGATAACCGCAAGATAACTCCGCTCATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAGACTGAGAGTAATCATGATACTGCACTAA
Peptide sequence:
MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHYKFCELLIGKGAHIDVRNKKGNTPLWLAANGGHLDVVQLLVQATADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLKKCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALAAKREKRKEKRRKKKEEQRRKLEEIEAKNKENFELQAAQEKEKLKVEEEPEVLTEPPSATTTTTIGISATWTTLAGSHGKRNNTITTTSSKRKNRKNKITPENVQIIFDDPLPISYSQPEKVNGESKSSSTSESGDSDNMRISSCSDESSNSNSSRKSNNHASAVVTTTMASKKQPSVLVTFPKEERKSVSGKASIKLSETVNEGTSNSLSTCTKSGPSPLSSPNGKLTVASPKRGPKREEGWKEVVRRSKKVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITIRLRVIMILH
IRESfinder result
IRESfinder score
0.47934684
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page