top of page
mmu_circAnkrd17_1476
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_1476
mm39_Chr. Position ID:
chr5|90436442|90451924|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,654,2364,4618,7001,9403,9956,11405,15328
Genomic length:
15482
Exon/intron sizes in nt:
1,10,19,22,38,95,23,41,00,00,00,00,000
Flanking exon/introns:
chr5:90435195-90436442|chr5:90451924-90513525
Splice length:
1476
Other database IDs:
circAtlas: mmu-Ankrd17_0084
Human Ortholog IDs:
Mature spliced Sequence:
GTGGAGTCTTTCATTTTGGACCAGGATGATTTGGAGAATCCAATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCAGGACAGTAGATCCAGAGACGCAGGCTCGACTGGAAGCTTTACTAGAAGCTGCAGGAATAGGCAAGTTATCGACGGCGGATGGTAAAGCCTTTGCAGACCCTGAAGTGCTCCGCAGGTTAACATCGTCTGTCAGTTGTGCGTTGGATGAAGCTGCTGCTGCACTTACCCGGATGAGAGCTGAGAGCACAGCAAATGCAGGGCAGTCGGACAACCGCAGTCTGGCAGAAGCGTGTTCAGAAGGAGATGTAAATGCTGTGCGGAAACTACTCATTGAAGGTCGGAGTGTGAATGAGCACACCGAGGAAGGGGAGAGCCTCCTTTGTCTCGCTTGTTCTGCTGGGTACTATGAGCTTGCACAGGTTTTATTGGCAATGCACGCAAATGTGGAAGACAGGGGAATCAAAGGTGACATCACACCTTTAATGGCTGCTGCTAATGGAGGACATGTCAAAATCGTGAAGTTGCTGCTAGCTCATAAAGCTGATGTCAATGCACAGTCTTCAACAGGCAACACAGCTCTCACCTATGCTTGTGCTGGAGGCTACGTAGATGTTGTAAAGGTGCTCTTGGAATCCGGTGCTAGTATTGAGGACCATAATGAGAATGGTCACACACCTCTTATGGAAGCTGGAAGTGCTGGGCATGTGGAAGTAGCCAGATTGCTGCTAGAAAATGGAGCTGGCATCAATACGCATTCCAATGAATTTAAAGAGAGTGCCCTTACATTAGCTTGTTATAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGACAGCAACAGGAGACACA
60.25
CGTCAGCAGTGCCTGATAGA
59.54
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGCAACAGGAGACACAGCT
60.25
CGTCAGCAGTGCCTGATAGA
59.54
177
PCR template sequence:
TCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGTGGAGTCTTTCATTTTGGACCAGGATGATTTGGAGAATCCAATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-322-5p(4), mmu-miR-15a-5p(3), mmu-miR-15b-5p(3), mmu-miR-16-5p(2), mmu-miR-33-5p(2), mmu-miR-210-3p(1), mmu-miR-221-3p(1), mmu-miR-222-3p(1), mmu-miR-339-5p(1), mmu-miR-22-3p(1), mmu-miR-499-5p(1), mmu-miR-335-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGGTGCAGATCTGGTGGAGTCTTTCA
siRNA sets
AGACTCCACCAGATCTGCA, ACTCCACCAGATCTGCACC, GAAAGACTCCACCAGATCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_1476_ORF_1
1.1564
0.166179761
0.999999991
2910
ORF sequence:
ATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCAGGACAGTAGATCCAGAGACGCAGGCTCGACTGGAAGCTTTACTAGAAGCTGCAGGAATAGGCAAGTTATCGACGGCGGATGGTAAAGCCTTTGCAGACCCTGAAGTGCTCCGCAGGTTAACATCGTCTGTCAGTTGTGCGTTGGATGAAGCTGCTGCTGCACTTACCCGGATGAGAGCTGAGAGCACAGCAAATGCAGGGCAGTCGGACAACCGCAGTCTGGCAGAAGCGTGTTCAGAAGGAGATGTAAATGCTGTGCGGAAACTACTCATTGAAGGTCGGAGTGTGAATGAGCACACCGAGGAAGGGGAGAGCCTCCTTTGTCTCGCTTGTTCTGCTGGGTACTATGAGCTTGCACAGGTTTTATTGGCAATGCACGCAAATGTGGAAGACAGGGGAATCAAAGGTGACATCACACCTTTAATGGCTGCTGCTAATGGAGGACATGTCAAAATCGTGAAGTTGCTGCTAGCTCATAAAGCTGATGTCAATGCACAGTCTTCAACAGGCAACACAGCTCTCACCTATGCTTGTGCTGGAGGCTACGTAGATGTTGTAAAGGTGCTCTTGGAATCCGGTGCTAGTATTGAGGACCATAATGAGAATGGTCACACACCTCTTATGGAAGCTGGAAGTGCTGGGCATGTGGAAGTAGCCAGATTGCTGCTAGAAAATGGAGCTGGCATCAATACGCATTCCAATGAATTTAAAGAGAGTGCCCTTACATTAGCTTGTTATAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTGGTGGAGTCTTTCATTTTGGACCAGGATGATTTGGAGAATCCAATGCTGGAAACAGCTTCCAAGTTGCTTCTATCAGGCACTGCTGACGGTGCTGACCTCAGGACAGTAGATCCAGAGACGCAGGCTCGACTGGAAGCTTTACTAGAAGCTGCAGGAATAGGCAAGTTATCGACGGCGGATGGTAAAGCCTTTGCAGACCCTGAAGTGCTCCGCAGGTTAACATCGTCTGTCAGTTGTGCGTTGGATGAAGCTGCTGCTGCACTTACCCGGATGAGAGCTGAGAGCACAGCAAATGCAGGGCAGTCGGACAACCGCAGTCTGGCAGAAGCGTGTTCAGAAGGAGATGTAAATGCTGTGCGGAAACTACTCATTGAAGGTCGGAGTGTGAATGAGCACACCGAGGAAGGGGAGAGCCTCCTTTGTCTCGCTTGTTCTGCTGGGTACTATGAGCTTGCACAGGTTTTATTGGCAATGCACGCAAATGTGGAAGACAGGGGAATCAAAGGTGACATCACACCTTTAATGGCTGCTGCTAATGGAGGACATGTCAAAATCGTGAAGTTGCTGCTAGCTCATAAAGCTGATGTCAATGCACAGTCTTCAACAGGCAACACAGCTCTCACCTATGCTTGTGCTGGAGGCTACGTAGATGTTGTAAAGGTGCTCTTGGAATCCGGTGCTAGTATTGAGGACCATAATGAGAATGGTCACACACCTCTTATGGAAGCTGGAAGTGCTGGGCATGTGGAAGTAGCCAGATTGCTGCTAGAAAATGGAGCTGGCATCAATACGCATTCCAATGAATTTAAAGAGAGTGCCCTTACATTAGCTTGTTATAAAGGACATCTAGAGATGGTGCGATTTCTTTTGGAAGCAGGCGCTGATCAAGAACATAAGACAGATGAAATGCACACTGCTCTAATGGAGGCTTGCATGGATGGCCATGTTGAAGTAGCTAGGTTGCTTCTGGACAGTGGTGCTCAAGTGAACATGCCAGCTGATTCATTTGAGTCACCATTGACTTTGGCTGCATGTGGAGGACATGTGGAACTTGCAGCCTTACTTATTGAAAGAGGAGCTAGCCTGGAAGAGGTCAATGATGAAGGTTATACTCCTTTGATGGAGGCAGCTCGTGAAGGACATGAAGAAATGGTGGCGTTACTTCTTGGCCAAGGAGCAAATATCAATGCACAGACAGAAGAAACTCAAGAAACTGCCTTGACCCTGGCTTGCTGTGGAGGCTTTCTGGAAGTAGCAGACTTTCTGATTAAGGCTGGGGCTGATATAGAACTAGGGTGTTCTACTCCTTTGATGGAAGCTGCTCAAGAAGGTCACTTGGAGTTAGTGAAATACTTACTAGCTGCAGGAGCTAATGTTCATGCAACGACAGCAACAGGAGACACAGCTTTAACATATGCCTGTGAAAATGGCCATACGGATGTAGCAGACGTCTTACTCCAGGCAGGTGCAGATCTG
Peptide sequence:
MLETASKLLLSGTADGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAESTANAGQSDNRSLAEACSEGDVNAVRKLLIEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGIKGDITPLMAAANGGHVKIVKLLLAHKADVNAQSSTGNTALTYACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAGSAGHVEVARLLLENGAGINTHSNEFKESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADLVESFILDQDDLENPMLETASKLLLSGTADGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVSCALDEAAAALTRMRAESTANAGQSDNRSLAEACSEGDVNAVRKLLIEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGIKGDITPLMAAANGGHVKIVKLLLAHKADVNAQSSTGNTALTYACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAGSAGHVEVARLLLENGAGINTHSNEFKESALTLACYKGHLEMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGHVELAALLIERGASLEEVNDEGYTPLMEAAREGHEEMVALLLGQGANINAQTEETQETALTLACCGGFLEVADFLIKAGADIELGCSTPLMEAAQEGHLELVKYLLAAGANVHATTATGDTALTYACENGHTDVADVLLQAGADL
IRESfinder result
IRESfinder score
0.368617723
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page