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mmu_circAnkrd17_1302
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd17_1302
mm39_Chr. Position ID:
chr5|90398233|90411280|-
Gene name:
Ankrd17
Transcript:
ENSMUST00000014421.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
28,27,26,25,24,23,22
Exon/intron offsets:
0,2492,3120,4265,8059,9710,12884
Genomic length:
13047
Exon/intron sizes in nt:
1,50,15,64,48,17,21,17,00,000
Flanking exon/introns:
chr5:90392353-90398233|chr5:90411280-90411849
Splice length:
1302
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCAACTGCAGATGTAGATGCAGCAGATAACCGCAAGATAACTCCGCTCATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGAATGTACTGGTGCAC
60.04
TGCTTGCACCAGTAGCTGAA
59.89
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGAATGTACTGGTGCAC
60.04
GCACCAGTAGCTGAACCACA
60.25
170
PCR template sequence:
GAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAGGGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(1), mmu-miR-136-5p(1), mmu-miR-411-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TAATAACTATAAGGGGAGCTCATATT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD17_1302_ORF_1
1.0171
0.144075482
0.999999664
2457
ORF sequence:
ATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATAAGGGGAGCTCATATTGATGTGCGAAACAAGAAGGGGAACACTCCGTTATGGCTAGCAGCAAATGGTGGACACCTAGATGTGGTTCAGCTACTGGTGCAAGCAACTGCAGATGTAGATGCAGCAGATAACCGCAAGATAACTCCGCTCATGGCTGCATTTAGAAAGGGTCATGTGAAGGTGGTGCGCTACTTAGTCAAAGAGGTCAATCAGTTTCCATCAGATTCGGAATGCATGAGGTATATAGCAACCATCACTGATAAGGAGATGCTGAAGAAGTGTCATCTTTGTATGGAGTCAATAGTACAAGCCAAAGACAGGCAGGCTGCTGAAGCAAATAAGAATGCCAGCATACTACTGGAGGAGCTAGACCTGGAAAAGTTAAGGGAAGAAAGTCGAAGGCTGGCTTTGGCTGCTAAAAGAGAAAAGCGAAAAGAGAAAAGAAGGAAAAAAAAGGAAGAACAAAGAAGGAAATTAGAGGAAATTGAAGCCAAAAATAAGGAGAACTTTGAACTTCAAGCTGCTCAAGAAAAAGAGAAACTTAAAGTTGAAGAAGAACCTGAAGTCTTGACAGAGCCTCCAAGTGCCACTACCACCACTACCATAGGAATATCTGCTACATGGACTACTTTGGCAGGTTCCCATGGTAAAAGAAATAATACCATAACTACAACCAGCTCAAAGAGGAAAAACAGGAAAAATAAAATTACTCCAGAAAATGTTCAAATTATATTTGATGATCCACTACCAATCTCGTACAGTCAGCCAGAGAAGGTGAATGGAGAGTCCAAGAGCAGCAGCACCAGCGAGAGTGGGGACAGTGACAACATGAGGATTTCCAGCTGCAGTGACGAGAGCAGCAACAGCAACAGCAGCAGAAAGAGTAACAATCATGCGTCGGCTGTGGTCACGACCACTATGGCCAGCAAGAAGCAGCCGTCTGTTCTTGTTACATTTCCAAAAGAGGAGAGAAAATCCGTTTCGGGCAAGGCTTCTATAAAATTGTCAGAGACTGTCAATGAAGGGACCAGTAATTCTCTGTCAACTTGTACAAAATCTGGTCCGTCTCCTCTTTCCTCTCCAAATGGGAAGTTAACAGTAGCAAGTCCTAAGCGTGGGCCAAAGAGGGAAGAAGGATGGAAGGAGGTCGTAAGGCGGTCAAAAAAAGTATCTGTTCCATCAACTGTGATATCCAGAGTTATTGGAAGAGGTGGCTGTAATATCAATGCTATTCGGGAATGTACTGGTGCACACATAGATATTGACAAGCAAAAAGACAAGACTGGAGACCGGATAATAACTATA
Peptide sequence:
MAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLKKCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALAAKREKRKEKRRKKKEEQRRKLEEIEAKNKENFELQAAQEKEKLKVEEEPEVLTEPPSATTTTTIGISATWTTLAGSHGKRNNTITTTSSKRKNRKNKITPENVQIIFDDPLPISYSQPEKVNGESKSSSTSESGDSDNMRISSCSDESSNSNSSRKSNNHASAVVTTTMASKKQPSVLVTFPKEERKSVSGKASIKLSETVNEGTSNSLSTCTKSGPSPLSSPNGKLTVASPKRGPKREEGWKEVVRRSKKVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITIRGAHIDVRNKKGNTPLWLAANGGHLDVVQLLVQATADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLKKCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALAAKREKRKEKRRKKKEEQRRKLEEIEAKNKENFELQAAQEKEKLKVEEEPEVLTEPPSATTTTTIGISATWTTLAGSHGKRNNTITTTSSKRKNRKNKITPENVQIIFDDPLPISYSQPEKVNGESKSSSTSESGDSDNMRISSCSDESSNSNSSRKSNNHASAVVTTTMASKKQPSVLVTFPKEERKSVSGKASIKLSETVNEGTSNSLSTCTKSGPSPLSSPNGKLTVASPKRGPKREEGWKEVVRRSKKVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITI
IRESfinder result
IRESfinder score
0.418584619
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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