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mmu_circAnkrd12_5514
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkrd12_5514
mm39_Chr. Position ID:
chr17|66289830|66356928|-
Gene name:
Ankrd12
Transcript:
ENSMUST00000038116.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
9,8,7,6,5,4,3
Exon/intron offsets:
0,41240,44416,48535,54657,59697,66950
Genomic length:
67098
Exon/intron sizes in nt:
46,58,14,81,43,20,11,40,00,000
Flanking exon/introns:
chr17:66286595-66289830|chr17:66356928-66359948
Splice length:
5514
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGTAAAGACAAGATTGCATCTTACAGCAAAACTTCAAAAATTGACCGAGGTGATATGGGCAAGGAAATGAGAGAGAAACCATCCATGAAACGAAAGCTGCCTTTTACAGTCAGCCCATCGAGAAATGAGGAGCGCGACTCAGACACAGATTCAGACCCAGGACATACAAGTGAAAATTGGGGGGAGAGACTTATATCTTCTTACAGGACATACTCAGAAAAAGAAGGTCCAGAGAAGAAGAAAACAAAAAAAGAAGCTGGAACTAAGAAGTCCACCCCAGTTAGCATTCTTTTTGGTTATCCACTTTCTGAACGAAAGCAGATGGCACTCCTAATGCAGATGACAGCAAGGGACAACAGCCCAGATTCCACACCAAGTCATCCGTCACAGGCAACGCCAGCCCAGAAGAAAACGCCCAGCTCTTCATCTCGACAGAAAGATAAAATTAATAAAAGAAATGAGCGTGGCGAAACTCCTTTACACATGGCCGCTATTCGAGGAGACGTGAAGCAAGTCAAAGAGTTAATTAGTTTAGGGGCAAACGTCAATGTGAAGGACTTTGCAGGTTGGACCCCTTTGCATGAAGCTTGCAATGTTGGCTATTACGATGTTGCTAAGATACTGATAGCAGCTGGCGCAGACGTTAACACACAAGGACTGGATGATGACACCCCGCTCCATGACTCTGCCAGCAGTGGCCATAGAGACATAGTGAAGTTGTTGCTTCGTCATGGCGGGAATCCATTCCAAGCTAATAAACATGGAGAACGGCCAGTGGATGTGGCAGAGACAGAGGAGTTGGAGTTGCTGCTAAAAAGAGAGGTGCCTTTGTCTGGCGATGATGAAAGTTATACAGATTCAGAAGAGGCTCAGTCTGTAAATCCTTCTAGTGTTGATGAAAATATTGACTCAGAGACAGAGAAAGACTCTTTCGTCTGTGGCAGTAAAATCCTCCCAAGCAAAGCCCCGCTGCCTTCTGCACTGGATGAGTATGAGTTCAAAGATGATGATGAAGAAGAGATAAGTAAGATGATTGACGACAGGCACATTCTTAGGAAAGAACAGCGGAGAGAGAATGAATCTGAAGCAGAAAGGAGTGGTCTGTTTGCAAAACAGGAGAAAACCTTCTATTCTAAGTCATTTAAAACAAAAAAACAGAAGCCGTCAAGGGTTCTGTGCTCCAGTACTGAAAGCTCTGATGAAGAGGGTCTTCAGAACAGAAAGATTTCTACTGCTTGTTCTGTTGCTGAATCATCACATCCTGATATGCAAGCCAAAAAAGAATATGAATACAAACAGAAAGGCAAAGTTAAAAGAAAATTAAAAAATCAGAATAAAAACAAAGAGAACCAAGAGCTGAAACAAGAAAAAGAGGGGAAAGAAAATAGCAGGATAGCAACCTTGACAGTTAATACTGCGCTGGATTGTTCAGAAAAATACAGAGAGGAGGGGAACTTCAGGAAATCTTTTAGCCCAAAGGATGATACTTCATTACACTTATTTCATATTTCCACTGGTAAATCTCCCAAACATTCCTGTGGATTAAGTGAAAAACAGACACCACTGAAGCAAGAACACACGAAAGCATGCATATCCCCAGGAAGTTCTGAAATGTCATTACAGCCTGATCTCACTCGGTATGATAATGCAGAACCTGAAAGTTCAAATGTCAAATCTTATAAGCACAAGGAAAAAAACAAACAGCAGAAAGATTTTCACATAGAGTTTGGTGAAAAATCAAATGCCAAAATTAAAGATGAAGATCATAATCCAGCATTTGAAAACTCAGACTGCACACTGAAGAAGATGGATAAAGAGGGTAAAACATTAAAAAAACATAAATTAAAACATAAAGAGAAGGATAAAGAAAAGCACAAAAAGGAAGTTGAAGGTGAAAAGGAAAAATATAAAAATAAAGACAATGCTAAAGAGCTACAGAGGAGCATCGAATTTGACAGAGAGTTTTGGAAAGAAAATTTTTTTAAAAGTGATGAAACTGAGGATCTCTTTTTAACTATGGAACATGAGTCCATAATAGAAAAAAAGACAAAAATGGAAAAAAACATGAAAGATGATAGGTCAGCTAAAGAAAAGCATGTCTCAAAAGAAAGGAACTTTAAAGAAGAACGGGAAAAGACTAAAAAGGAAAATGAAAAATCTCTTAGGGAAGAAAAGGTAAAAGATCCGAAAGAAGAAAAAGACAGTGTATCCACAGAGAAGGAGGCCGAGTGCTGTTCGGTGGGTGTCAGTGTGAGCCAGGAAGCTGCAGGGCTGCATTCATCAGAAAAGGAAATGGATGCTGAGAAGCAAGAAAGACACACAAAAGAGAGGGAAAAGTCTGATCGGCGCTTTCAGACTAAGGAGAAAGAGCTTGACAGGAACGAGAGGAAATTTTCTGAAAAAGAAAAGAAGATAAAACATGAACATAAGTCAGAAAGAGAGAAGCTGGATTTCAGTGACTGCACTGACAGAGTGAGAGAGAAGGACAAGCTGTACTCACACCAGACAGAAAGGTGCCACAAGGACAGCGAGAAGCTGAAAAACACTGTCAGAAAGACTGATGACAGAGAGAGGAACAGAGAAAAGGCGGATAGAAAGCACGACAGAGAGAAACCTGAACGAGAGAGGTACTTAGCAGAAAACAAAGAAAAGCACTTAGAGAAAAGAAAGCAATCTGACAGCAGTGAGTATTCCAAATCAGAGAAGGTCAGAACTAAAGACAGAGACAGGGAAGGAGAGAAGAAGGAGAAACTTAGAGATAAAGAAAGTGTAAATGTAACTAACTTGAAACATTTGCAGGAAGAGAGAAAGTCCAGTACAGGAGACAGCAGTGGTAAAACCCAGCATGAGAAAGCTCTGTCCCTTAAAGAAAGGGCAAGAGATGAGCCTTTGAAAACTCCAGATGGAAAAGAGAAAGATAAAAAGGATATAGACAGATACAAAGAGCGAGACAAGCGTAAAGATAAAGCCCAGCTAAATACTTTAATCAGACTAAAATCTGAAACAGAGAAGCTTAAACCTAAATTATCACCAGCATCAAAAGATACTCGACCTAAAGAAAAGAGGTTAGTAAATGATGATTTAATGCAGACAAGTTTTGAACGAATGCTTAGCCTTAAAGACCTAGAAATAGAACAGTGGCACAGAAAACATAAGGAAAAAATTAAGCAAAAGGAAAAAGAACGATTACGCAATCGTACTTGTTTAGAACTTAAAGTAAAAGATAAAGAAAAAACAAAACATGCACCCACAGAATCCAAAAGTAAAGAACTTACCAGGTCAAGAAGTTCAGAGTTGACTGATGTTTATAGCAAGGAGAAACAATCTAAAGATGTTGGCAGTAATCGCTCACAATCTGTTGACAACAGAAATGTATTGAATTTAGGAAAGCCATCCTACATTTCAGAGAGTGGCTCCAACCGGTCTCCTAGGTCGGAAGGTGAGAGGCTGGGTCTTAGCTCTAGGTCTGTGTCCATGCTTTCTGTTGCTAGTTCAGAAGACTCTTGCCATACAGTGACAACCCCAAGGCCTCTCGTTGAGTATGACTCTGACTTTATGTTAGAGGGCTCGGAATCTCAGTTGTCATTTTCTCAGTCACCTTTTTTGCCAAATGCCAAATCTCCAGCTCTTTATGAAAGAGAGCTGGAGGGTCTCACTGAACTACCAGACCGACTTAAACCACCATATACAAACAGACTTCCAGTGTGCCATCTCAGGTCATCTTCTGTGGAAGATGTTAAACTAATTACTAATGAGGTAAGACCTGCTGTAGAAATTAGAAGATGCAGTATGCCCTCAGTTATCTGTGAGCCCATAAAACATTTCCAAGTATCAGAAGAAAGCAGTCAAGGCAACTTAGCTGTTCCCAGAGAGACCTGTCTGTCTCCCAAGCCTGAAGTGTCTTCAGCAGTACCTGAGAGGGGCCTTTCGCATGTGTCTGACTTACATCCTAACTGTACAGGCTCTCCAACGAGGTCTGCAAACAGCAGCTATATTTCATCTGATGTAAATGTAATCAAGAGTGCAACTCTTGTGGGTACACTGATTGACAGTTCGATGCATTTGGAACCGTCTAATCAGGTTGGAGTGATTCCAAGTAAATCATGGGAGACGCCTGTTGATAAACTGGAGTCTTTAAGCACCAATGACTTCATCTGTCCAGATTCTAATATATCTGATCAAGATTCCTCTGCTCAGAGTTTTTATAATTCAGAAAACAAAATGTTAAGAGAACAAAATACTGACTGCTTACCTCCGCACCAGCCTGAACTGCCAGGAAACTCATGTGCTCAGGACCCAGCATCCTTTCTGTCTTCACCTCAGCCCTGCTCTTTTTCCAACCAACCACTGGCAGGTGCTGACTCTGTTCCGAAACCCGTGTCTTTGTCATATGTTGTCAGTCAAGAGCCAGGTGTTTTACAACAGAAAAGTGCAGCTCAGATGGCCAGTTCTGTTTTAGATAGTGATAATAACTTTCCAGAGGATGTGGAAAATACATTTGTCTTAGCAGACATTCAGAAGACAAATTCTTTTTTACCAGCTTACTCTGAAAGCACTGTGCAAGAAGCACTCCCAAGCTTTGAGAAGGCCAATACTTTGCTTGTGTTGCCATCAGAAAAGGACTTCAATGGGAGTGATACTGCTCAGCCAAACACACATTATGCATTTAGCAAACTCACATACAAGTCTTCCAATAGCCAGGAAATTGAGAAGGGCCCAGATGATACTCAAATCATTTCACATGAAAAGGAAAACAAATTACAAAGTTTGGTCTTAACTCAGTTGAGTAAATGTGATTCTGATTTGTATGAGATGAATGCAGGGCTGCCAAAAGGAAACCTGAATGAACAGGATAACCCAAAGCATGGTCTTGACAGCGAAAAGTACTCGCTTTCCACTGAAGATGAAGAATCTCAGCAGAGCACCTTATCAAGTGTGGAAAACCATTCACAGCAGTCGGCCCAACCAGAGATGCATAAATATGACCAGCTTAGTAAAGTAGAACTAGAAGAAAATGCCGAAGACGATAAAACTGAAAACCAGACCCCTCAAAGAGTGACTAGAAACAAAGCAAGCACAGTGGTCAATCCAAGCAAGCCCATGCTTGCTGGCTGTGCCCTTGTAGCAGAGAAAGATAACGAGTCCTCCCCTAGGGGACGAATCAGACTCACTGAAGAGGATGATCCTCAGATCCACCATCCTCGGAAGAGGAAAGTGTCACGGGTTCCTCAGCCTGTGCAAGTGAGCCCCTCTTTACTGCAAGCAAAGGAGAAAACTCAGCAGTCTCTAGCAGCCATTGTAGATTCTCTGAAGTTAGATGAGATTGAGCCATACAGTTCTGAGAGAGCAAATCCATATTTTGAATATTTGCACATAAGAAAAAAAATTGAAGAAAAACGCAAGTTGCTATGTAGCGTTATCCCTCAAGCTCCTCAGTATTATGATGAATACGTAACGTTTAATGGATCCTATCTCCTGGATGGAAACCCCTTAAGCAAGATTTGTATTCCTACA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTATCCCTCAAGCTCCTCA
59.24
CCTTGCCCATATCACCTCGG
60.25
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTATCCCTCAAGCTCCTCA
59.24
GCCCATATCACCTCGGTCAA
59.53
160
PCR template sequence:
CGTTATCCCTCAAGCTCCTCAGTATTATGATGAATACGTAACGTTTAATGGATCCTATCTCCTGGATGGAAACCCCTTAAGCAAGATTTGTATTCCTACAAGTAAAGACAAGATTGCATCTTACAGCAAAACTTCAAAAATTGACCGAGGTGATATGGGCAAGGAAATGAGAGAGAAACCATCCATGAAACGAAAGCTGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
41
Interacting miRNAs (#binding sites)
mmu-miR-203-3p(2), mmu-miR-138-5p(2), mmu-miR-297a-5p(2), mmu-miR-335-3p(2), mmu-miR-7b-5p(1), mmu-miR-206-3p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-31-5p(1), mmu-miR-19b-3p(1), mmu-miR-200c-3p(1), mmu-miR-322-5p(1), mmu-miR-19a-3p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-18a-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-326-3p(1), mmu-miR-143-3p(1), mmu-miR-136-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-192-5p(1), mmu-miR-183-5p(1), mmu-miR-215-5p(1), mmu-miR-107-3p(1), mmu-miR-383-5p(1), mmu-miR-342-5p(1), mmu-miR-98-5p(1), mmu-miR-690(1), mmu-miR-342-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-669d-5p(1), mmu-miR-3470b(1), mmu-miR-1199-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGTATTCCTACAAGTAAAGACAAGA
siRNA sets
CTTGTCTTTACTTGTAGGA, TCTTGTCTTTACTTGTAGG, TTTACTTGTAGGAATACAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKRD12_5514_ORF_1
0.9303
0.113285906
1
10974
ORF sequence:
ATGGGCAAGGAAATGAGAGAGAAACCATCCATGAAACGAAAGCTGCCTTTTACAGTCAGCCCATCGAGAAATGAGGAGCGCGACTCAGACACAGATTCAGACCCAGGACATACAAGTGAAAATTGGGGGGAGAGACTTATATCTTCTTACAGGACATACTCAGAAAAAGAAGGTCCAGAGAAGAAGAAAACAAAAAAAGAAGCTGGAACTAAGAAGTCCACCCCAGTTAGCATTCTTTTTGGTTATCCACTTTCTGAACGAAAGCAGATGGCACTCCTAATGCAGATGACAGCAAGGGACAACAGCCCAGATTCCACACCAAGTCATCCGTCACAGGCAACGCCAGCCCAGAAGAAAACGCCCAGCTCTTCATCTCGACAGAAAGATAAAATTAATAAAAGAAATGAGCGTGGCGAAACTCCTTTACACATGGCCGCTATTCGAGGAGACGTGAAGCAAGTCAAAGAGTTAATTAGTTTAGGGGCAAACGTCAATGTGAAGGACTTTGCAGGTTGGACCCCTTTGCATGAAGCTTGCAATGTTGGCTATTACGATGTTGCTAAGATACTGATAGCAGCTGGCGCAGACGTTAACACACAAGGACTGGATGATGACACCCCGCTCCATGACTCTGCCAGCAGTGGCCATAGAGACATAGTGAAGTTGTTGCTTCGTCATGGCGGGAATCCATTCCAAGCTAATAAACATGGAGAACGGCCAGTGGATGTGGCAGAGACAGAGGAGTTGGAGTTGCTGCTAAAAAGAGAGGTGCCTTTGTCTGGCGATGATGAAAGTTATACAGATTCAGAAGAGGCTCAGTCTGTAAATCCTTCTAGTGTTGATGAAAATATTGACTCAGAGACAGAGAAAGACTCTTTCGTCTGTGGCAGTAAAATCCTCCCAAGCAAAGCCCCGCTGCCTTCTGCACTGGATGAGTATGAGTTCAAAGATGATGATGAAGAAGAGATAAGTAAGATGATTGACGACAGGCACATTCTTAGGAAAGAACAGCGGAGAGAGAATGAATCTGAAGCAGAAAGGAGTGGTCTGTTTGCAAAACAGGAGAAAACCTTCTATTCTAAGTCATTTAAAACAAAAAAACAGAAGCCGTCAAGGGTTCTGTGCTCCAGTACTGAAAGCTCTGATGAAGAGGGTCTTCAGAACAGAAAGATTTCTACTGCTTGTTCTGTTGCTGAATCATCACATCCTGATATGCAAGCCAAAAAAGAATATGAATACAAACAGAAAGGCAAAGTTAAAAGAAAATTAAAAAATCAGAATAAAAACAAAGAGAACCAAGAGCTGAAACAAGAAAAAGAGGGGAAAGAAAATAGCAGGATAGCAACCTTGACAGTTAATACTGCGCTGGATTGTTCAGAAAAATACAGAGAGGAGGGGAACTTCAGGAAATCTTTTAGCCCAAAGGATGATACTTCATTACACTTATTTCATATTTCCACTGGTAAATCTCCCAAACATTCCTGTGGATTAAGTGAAAAACAGACACCACTGAAGCAAGAACACACGAAAGCATGCATATCCCCAGGAAGTTCTGAAATGTCATTACAGCCTGATCTCACTCGGTATGATAATGCAGAACCTGAAAGTTCAAATGTCAAATCTTATAAGCACAAGGAAAAAAACAAACAGCAGAAAGATTTTCACATAGAGTTTGGTGAAAAATCAAATGCCAAAATTAAAGATGAAGATCATAATCCAGCATTTGAAAACTCAGACTGCACACTGAAGAAGATGGATAAAGAGGGTAAAACATTAAAAAAACATAAATTAAAACATAAAGAGAAGGATAAAGAAAAGCACAAAAAGGAAGTTGAAGGTGAAAAGGAAAAATATAAAAATAAAGACAATGCTAAAGAGCTACAGAGGAGCATCGAATTTGACAGAGAGTTTTGGAAAGAAAATTTTTTTAAAAGTGATGAAACTGAGGATCTCTTTTTAACTATGGAACATGAGTCCATAATAGAAAAAAAGACAAAAATGGAAAAAAACATGAAAGATGATAGGTCAGCTAAAGAAAAGCATGTCTCAAAAGAAAGGAACTTTAAAGAAGAACGGGAAAAGACTAAAAAGGAAAATGAAAAATCTCTTAGGGAAGAAAAGGTAAAAGATCCGAAAGAAGAAAAAGACAGTGTATCCACAGAGAAGGAGGCCGAGTGCTGTTCGGTGGGTGTCAGTGTGAGCCAGGAAGCTGCAGGGCTGCATTCATCAGAAAAGGAAATGGATGCTGAGAAGCAAGAAAGACACACAAAAGAGAGGGAAAAGTCTGATCGGCGCTTTCAGACTAAGGAGAAAGAGCTTGACAGGAACGAGAGGAAATTTTCTGAAAAAGAAAAGAAGATAAAACATGAACATAAGTCAGAAAGAGAGAAGCTGGATTTCAGTGACTGCACTGACAGAGTGAGAGAGAAGGACAAGCTGTACTCACACCAGACAGAAAGGTGCCACAAGGACAGCGAGAAGCTGAAAAACACTGTCAGAAAGACTGATGACAGAGAGAGGAACAGAGAAAAGGCGGATAGAAAGCACGACAGAGAGAAACCTGAACGAGAGAGGTACTTAGCAGAAAACAAAGAAAAGCACTTAGAGAAAAGAAAGCAATCTGACAGCAGTGAGTATTCCAAATCAGAGAAGGTCAGAACTAAAGACAGAGACAGGGAAGGAGAGAAGAAGGAGAAACTTAGAGATAAAGAAAGTGTAAATGTAACTAACTTGAAACATTTGCAGGAAGAGAGAAAGTCCAGTACAGGAGACAGCAGTGGTAAAACCCAGCATGAGAAAGCTCTGTCCCTTAAAGAAAGGGCAAGAGATGAGCCTTTGAAAACTCCAGATGGAAAAGAGAAAGATAAAAAGGATATAGACAGATACAAAGAGCGAGACAAGCGTAAAGATAAAGCCCAGCTAAATACTTTAATCAGACTAAAATCTGAAACAGAGAAGCTTAAACCTAAATTATCACCAGCATCAAAAGATACTCGACCTAAAGAAAAGAGGTTAGTAAATGATGATTTAATGCAGACAAGTTTTGAACGAATGCTTAGCCTTAAAGACCTAGAAATAGAACAGTGGCACAGAAAACATAAGGAAAAAATTAAGCAAAAGGAAAAAGAACGATTACGCAATCGTACTTGTTTAGAACTTAAAGTAAAAGATAAAGAAAAAACAAAACATGCACCCACAGAATCCAAAAGTAAAGAACTTACCAGGTCAAGAAGTTCAGAGTTGACTGATGTTTATAGCAAGGAGAAACAATCTAAAGATGTTGGCAGTAATCGCTCACAATCTGTTGACAACAGAAATGTATTGAATTTAGGAAAGCCATCCTACATTTCAGAGAGTGGCTCCAACCGGTCTCCTAGGTCGGAAGGTGAGAGGCTGGGTCTTAGCTCTAGGTCTGTGTCCATGCTTTCTGTTGCTAGTTCAGAAGACTCTTGCCATACAGTGACAACCCCAAGGCCTCTCGTTGAGTATGACTCTGACTTTATGTTAGAGGGCTCGGAATCTCAGTTGTCATTTTCTCAGTCACCTTTTTTGCCAAATGCCAAATCTCCAGCTCTTTATGAAAGAGAGCTGGAGGGTCTCACTGAACTACCAGACCGACTTAAACCACCATATACAAACAGACTTCCAGTGTGCCATCTCAGGTCATCTTCTGTGGAAGATGTTAAACTAATTACTAATGAGGTAAGACCTGCTGTAGAAATTAGAAGATGCAGTATGCCCTCAGTTATCTGTGAGCCCATAAAACATTTCCAAGTATCAGAAGAAAGCAGTCAAGGCAACTTAGCTGTTCCCAGAGAGACCTGTCTGTCTCCCAAGCCTGAAGTGTCTTCAGCAGTACCTGAGAGGGGCCTTTCGCATGTGTCTGACTTACATCCTAACTGTACAGGCTCTCCAACGAGGTCTGCAAACAGCAGCTATATTTCATCTGATGTAAATGTAATCAAGAGTGCAACTCTTGTGGGTACACTGATTGACAGTTCGATGCATTTGGAACCGTCTAATCAGGTTGGAGTGATTCCAAGTAAATCATGGGAGACGCCTGTTGATAAACTGGAGTCTTTAAGCACCAATGACTTCATCTGTCCAGATTCTAATATATCTGATCAAGATTCCTCTGCTCAGAGTTTTTATAATTCAGAAAACAAAATGTTAAGAGAACAAAATACTGACTGCTTACCTCCGCACCAGCCTGAACTGCCAGGAAACTCATGTGCTCAGGACCCAGCATCCTTTCTGTCTTCACCTCAGCCCTGCTCTTTTTCCAACCAACCACTGGCAGGTGCTGACTCTGTTCCGAAACCCGTGTCTTTGTCATATGTTGTCAGTCAAGAGCCAGGTGTTTTACAACAGAAAAGTGCAGCTCAGATGGCCAGTTCTGTTTTAGATAGTGATAATAACTTTCCAGAGGATGTGGAAAATACATTTGTCTTAGCAGACATTCAGAAGACAAATTCTTTTTTACCAGCTTACTCTGAAAGCACTGTGCAAGAAGCACTCCCAAGCTTTGAGAAGGCCAATACTTTGCTTGTGTTGCCATCAGAAAAGGACTTCAATGGGAGTGATACTGCTCAGCCAAACACACATTATGCATTTAGCAAACTCACATACAAGTCTTCCAATAGCCAGGAAATTGAGAAGGGCCCAGATGATACTCAAATCATTTCACATGAAAAGGAAAACAAATTACAAAGTTTGGTCTTAACTCAGTTGAGTAAATGTGATTCTGATTTGTATGAGATGAATGCAGGGCTGCCAAAAGGAAACCTGAATGAACAGGATAACCCAAAGCATGGTCTTGACAGCGAAAAGTACTCGCTTTCCACTGAAGATGAAGAATCTCAGCAGAGCACCTTATCAAGTGTGGAAAACCATTCACAGCAGTCGGCCCAACCAGAGATGCATAAATATGACCAGCTTAGTAAAGTAGAACTAGAAGAAAATGCCGAAGACGATAAAACTGAAAACCAGACCCCTCAAAGAGTGACTAGAAACAAAGCAAGCACAGTGGTCAATCCAAGCAAGCCCATGCTTGCTGGCTGTGCCCTTGTAGCAGAGAAAGATAACGAGTCCTCCCCTAGGGGACGAATCAGACTCACTGAAGAGGATGATCCTCAGATCCACCATCCTCGGAAGAGGAAAGTGTCACGGGTTCCTCAGCCTGTGCAAGTGAGCCCCTCTTTACTGCAAGCAAAGGAGAAAACTCAGCAGTCTCTAGCAGCCATTGTAGATTCTCTGAAGTTAGATGAGATTGAGCCATACAGTTCTGAGAGAGCAAATCCATATTTTGAATATTTGCACATAAGAAAAAAAATTGAAGAAAAACGCAAGTTGCTATGTAGCGTTATCCCTCAAGCTCCTCAGTATTATGATGAATACGTAACGTTTAATGGATCCTATCTCCTGGATGGAAACCCCTTAAGCAAGATTTGTATTCCTACAAGTAAAGACAAGATTGCATCTTACAGCAAAACTTCAAAAATTGACCGAGGTGATATGGGCAAGGAAATGAGAGAGAAACCATCCATGAAACGAAAGCTGCCTTTTACAGTCAGCCCATCGAGAAATGAGGAGCGCGACTCAGACACAGATTCAGACCCAGGACATACAAGTGAAAATTGGGGGGAGAGACTTATATCTTCTTACAGGACATACTCAGAAAAAGAAGGTCCAGAGAAGAAGAAAACAAAAAAAGAAGCTGGAACTAAGAAGTCCACCCCAGTTAGCATTCTTTTTGGTTATCCACTTTCTGAACGAAAGCAGATGGCACTCCTAATGCAGATGACAGCAAGGGACAACAGCCCAGATTCCACACCAAGTCATCCGTCACAGGCAACGCCAGCCCAGAAGAAAACGCCCAGCTCTTCATCTCGACAGAAAGATAAAATTAATAAAAGAAATGAGCGTGGCGAAACTCCTTTACACATGGCCGCTATTCGAGGAGACGTGAAGCAAGTCAAAGAGTTAATTAGTTTAGGGGCAAACGTCAATGTGAAGGACTTTGCAGGTTGGACCCCTTTGCATGAAGCTTGCAATGTTGGCTATTACGATGTTGCTAAGATACTGATAGCAGCTGGCGCAGACGTTAACACACAAGGACTGGATGATGACACCCCGCTCCATGACTCTGCCAGCAGTGGCCATAGAGACATAGTGAAGTTGTTGCTTCGTCATGGCGGGAATCCATTCCAAGCTAATAAACATGGAGAACGGCCAGTGGATGTGGCAGAGACAGAGGAGTTGGAGTTGCTGCTAAAAAGAGAGGTGCCTTTGTCTGGCGATGATGAAAGTTATACAGATTCAGAAGAGGCTCAGTCTGTAAATCCTTCTAGTGTTGATGAAAATATTGACTCAGAGACAGAGAAAGACTCTTTCGTCTGTGGCAGTAAAATCCTCCCAAGCAAAGCCCCGCTGCCTTCTGCACTGGATGAGTATGAGTTCAAAGATGATGATGAAGAAGAGATAAGTAAGATGATTGACGACAGGCACATTCTTAGGAAAGAACAGCGGAGAGAGAATGAATCTGAAGCAGAAAGGAGTGGTCTGTTTGCAAAACAGGAGAAAACCTTCTATTCTAAGTCATTTAAAACAAAAAAACAGAAGCCGTCAAGGGTTCTGTGCTCCAGTACTGAAAGCTCTGATGAAGAGGGTCTTCAGAACAGAAAGATTTCTACTGCTTGTTCTGTTGCTGAATCATCACATCCTGATATGCAAGCCAAAAAAGAATATGAATACAAACAGAAAGGCAAAGTTAAAAGAAAATTAAAAAATCAGAATAAAAACAAAGAGAACCAAGAGCTGAAACAAGAAAAAGAGGGGAAAGAAAATAGCAGGATAGCAACCTTGACAGTTAATACTGCGCTGGATTGTTCAGAAAAATACAGAGAGGAGGGGAACTTCAGGAAATCTTTTAGCCCAAAGGATGATACTTCATTACACTTATTTCATATTTCCACTGGTAAATCTCCCAAACATTCCTGTGGATTAAGTGAAAAACAGACACCACTGAAGCAAGAACACACGAAAGCATGCATATCCCCAGGAAGTTCTGAAATGTCATTACAGCCTGATCTCACTCGGTATGATAATGCAGAACCTGAAAGTTCAAATGTCAAATCTTATAAGCACAAGGAAAAAAACAAACAGCAGAAAGATTTTCACATAGAGTTTGGTGAAAAATCAAATGCCAAAATTAAAGATGAAGATCATAATCCAGCATTTGAAAACTCAGACTGCACACTGAAGAAGATGGATAAAGAGGGTAAAACATTAAAAAAACATAAATTAAAACATAAAGAGAAGGATAAAGAAAAGCACAAAAAGGAAGTTGAAGGTGAAAAGGAAAAATATAAAAATAAAGACAATGCTAAAGAGCTACAGAGGAGCATCGAATTTGACAGAGAGTTTTGGAAAGAAAATTTTTTTAAAAGTGATGAAACTGAGGATCTCTTTTTAACTATGGAACATGAGTCCATAATAGAAAAAAAGACAAAAATGGAAAAAAACATGAAAGATGATAGGTCAGCTAAAGAAAAGCATGTCTCAAAAGAAAGGAACTTTAAAGAAGAACGGGAAAAGACTAAAAAGGAAAATGAAAAATCTCTTAGGGAAGAAAAGGTAAAAGATCCGAAAGAAGAAAAAGACAGTGTATCCACAGAGAAGGAGGCCGAGTGCTGTTCGGTGGGTGTCAGTGTGAGCCAGGAAGCTGCAGGGCTGCATTCATCAGAAAAGGAAATGGATGCTGAGAAGCAAGAAAGACACACAAAAGAGAGGGAAAAGTCTGATCGGCGCTTTCAGACTAAGGAGAAAGAGCTTGACAGGAACGAGAGGAAATTTTCTGAAAAAGAAAAGAAGATAAAACATGAACATAAGTCAGAAAGAGAGAAGCTGGATTTCAGTGACTGCACTGACAGAGTGAGAGAGAAGGACAAGCTGTACTCACACCAGACAGAAAGGTGCCACAAGGACAGCGAGAAGCTGAAAAACACTGTCAGAAAGACTGATGACAGAGAGAGGAACAGAGAAAAGGCGGATAGAAAGCACGACAGAGAGAAACCTGAACGAGAGAGGTACTTAGCAGAAAACAAAGAAAAGCACTTAGAGAAAAGAAAGCAATCTGACAGCAGTGAGTATTCCAAATCAGAGAAGGTCAGAACTAAAGACAGAGACAGGGAAGGAGAGAAGAAGGAGAAACTTAGAGATAAAGAAAGTGTAAATGTAACTAACTTGAAACATTTGCAGGAAGAGAGAAAGTCCAGTACAGGAGACAGCAGTGGTAAAACCCAGCATGAGAAAGCTCTGTCCCTTAAAGAAAGGGCAAGAGATGAGCCTTTGAAAACTCCAGATGGAAAAGAGAAAGATAAAAAGGATATAGACAGATACAAAGAGCGAGACAAGCGTAAAGATAAAGCCCAGCTAAATACTTTAATCAGACTAAAATCTGAAACAGAGAAGCTTAAACCTAAATTATCACCAGCATCAAAAGATACTCGACCTAAAGAAAAGAGGTTAGTAAATGATGATTTAATGCAGACAAGTTTTGAACGAATGCTTAGCCTTAAAGACCTAGAAATAGAACAGTGGCACAGAAAACATAAGGAAAAAATTAAGCAAAAGGAAAAAGAACGATTACGCAATCGTACTTGTTTAGAACTTAAAGTAAAAGATAAAGAAAAAACAAAACATGCACCCACAGAATCCAAAAGTAAAGAACTTACCAGGTCAAGAAGTTCAGAGTTGACTGATGTTTATAGCAAGGAGAAACAATCTAAAGATGTTGGCAGTAATCGCTCACAATCTGTTGACAACAGAAATGTATTGAATTTAGGAAAGCCATCCTACATTTCAGAGAGTGGCTCCAACCGGTCTCCTAGGTCGGAAGGTGAGAGGCTGGGTCTTAGCTCTAGGTCTGTGTCCATGCTTTCTGTTGCTAGTTCAGAAGACTCTTGCCATACAGTGACAACCCCAAGGCCTCTCGTTGAGTATGACTCTGACTTTATGTTAGAGGGCTCGGAATCTCAGTTGTCATTTTCTCAGTCACCTTTTTTGCCAAATGCCAAATCTCCAGCTCTTTATGAAAGAGAGCTGGAGGGTCTCACTGAACTACCAGACCGACTTAAACCACCATATACAAACAGACTTCCAGTGTGCCATCTCAGGTCATCTTCTGTGGAAGATGTTAAACTAATTACTAATGAGGTAAGACCTGCTGTAGAAATTAGAAGATGCAGTATGCCCTCAGTTATCTGTGAGCCCATAAAACATTTCCAAGTATCAGAAGAAAGCAGTCAAGGCAACTTAGCTGTTCCCAGAGAGACCTGTCTGTCTCCCAAGCCTGAAGTGTCTTCAGCAGTACCTGAGAGGGGCCTTTCGCATGTGTCTGACTTACATCCTAACTGTACAGGCTCTCCAACGAGGTCTGCAAACAGCAGCTATATTTCATCTGATGTAAATGTAATCAAGAGTGCAACTCTTGTGGGTACACTGATTGACAGTTCGATGCATTTGGAACCGTCTAATCAGGTTGGAGTGATTCCAAGTAAATCATGGGAGACGCCTGTTGATAAACTGGAGTCTTTAAGCACCAATGACTTCATCTGTCCAGATTCTAATATATCTGATCAAGATTCCTCTGCTCAGAGTTTTTATAATTCAGAAAACAAAATGTTAAGAGAACAAAATACTGACTGCTTACCTCCGCACCAGCCTGAACTGCCAGGAAACTCATGTGCTCAGGACCCAGCATCCTTTCTGTCTTCACCTCAGCCCTGCTCTTTTTCCAACCAACCACTGGCAGGTGCTGACTCTGTTCCGAAACCCGTGTCTTTGTCATATGTTGTCAGTCAAGAGCCAGGTGTTTTACAACAGAAAAGTGCAGCTCAGATGGCCAGTTCTGTTTTAGATAGTGATAATAACTTTCCAGAGGATGTGGAAAATACATTTGTCTTAGCAGACATTCAGAAGACAAATTCTTTTTTACCAGCTTACTCTGAAAGCACTGTGCAAGAAGCACTCCCAAGCTTTGAGAAGGCCAATACTTTGCTTGTGTTGCCATCAGAAAAGGACTTCAATGGGAGTGATACTGCTCAGCCAAACACACATTATGCATTTAGCAAACTCACATACAAGTCTTCCAATAGCCAGGAAATTGAGAAGGGCCCAGATGATACTCAAATCATTTCACATGAAAAGGAAAACAAATTACAAAGTTTGGTCTTAACTCAGTTGAGTAAATGTGATTCTGATTTGTATGAGATGAATGCAGGGCTGCCAAAAGGAAACCTGAATGAACAGGATAACCCAAAGCATGGTCTTGACAGCGAAAAGTACTCGCTTTCCACTGAAGATGAAGAATCTCAGCAGAGCACCTTATCAAGTGTGGAAAACCATTCACAGCAGTCGGCCCAACCAGAGATGCATAAATATGACCAGCTTAGTAAAGTAGAACTAGAAGAAAATGCCGAAGACGATAAAACTGAAAACCAGACCCCTCAAAGAGTGACTAGAAACAAAGCAAGCACAGTGGTCAATCCAAGCAAGCCCATGCTTGCTGGCTGTGCCCTTGTAGCAGAGAAAGATAACGAGTCCTCCCCTAGGGGACGAATCAGACTCACTGAAGAGGATGATCCTCAGATCCACCATCCTCGGAAGAGGAAAGTGTCACGGGTTCCTCAGCCTGTGCAAGTGAGCCCCTCTTTACTGCAAGCAAAGGAGAAAACTCAGCAGTCTCTAGCAGCCATTGTAGATTCTCTGAAGTTAGATGAGATTGAGCCATACAGTTCTGAGAGAGCAAATCCATATTTTGAATATTTGCACATAAGAAAAAAAATTGAAGAAAAACGCAAGTTGCTATGTAGCGTTATCCCTCAAGCTCCTCAGTATTATGATGAATACGTAACGTTTAATGGATCCTATCTCCTGGATGGAAACCCCTTAAGCAAGATTTGTATTCCTACA
Peptide sequence:
MGKEMREKPSMKRKLPFTVSPSRNEERDSDTDSDPGHTSENWGERLISSYRTYSEKEGPEKKKTKKEAGTKKSTPVSILFGYPLSERKQMALLMQMTARDNSPDSTPSHPSQATPAQKKTPSSSSRQKDKINKRNERGETPLHMAAIRGDVKQVKELISLGANVNVKDFAGWTPLHEACNVGYYDVAKILIAAGADVNTQGLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVAETEELELLLKREVPLSGDDESYTDSEEAQSVNPSSVDENIDSETEKDSFVCGSKILPSKAPLPSALDEYEFKDDDEEEISKMIDDRHILRKEQRRENESEAERSGLFAKQEKTFYSKSFKTKKQKPSRVLCSSTESSDEEGLQNRKISTACSVAESSHPDMQAKKEYEYKQKGKVKRKLKNQNKNKENQELKQEKEGKENSRIATLTVNTALDCSEKYREEGNFRKSFSPKDDTSLHLFHISTGKSPKHSCGLSEKQTPLKQEHTKACISPGSSEMSLQPDLTRYDNAEPESSNVKSYKHKEKNKQQKDFHIEFGEKSNAKIKDEDHNPAFENSDCTLKKMDKEGKTLKKHKLKHKEKDKEKHKKEVEGEKEKYKNKDNAKELQRSIEFDREFWKENFFKSDETEDLFLTMEHESIIEKKTKMEKNMKDDRSAKEKHVSKERNFKEEREKTKKENEKSLREEKVKDPKEEKDSVSTEKEAECCSVGVSVSQEAAGLHSSEKEMDAEKQERHTKEREKSDRRFQTKEKELDRNERKFSEKEKKIKHEHKSEREKLDFSDCTDRVREKDKLYSHQTERCHKDSEKLKNTVRKTDDRERNREKADRKHDREKPERERYLAENKEKHLEKRKQSDSSEYSKSEKVRTKDRDREGEKKEKLRDKESVNVTNLKHLQEERKSSTGDSSGKTQHEKALSLKERARDEPLKTPDGKEKDKKDIDRYKERDKRKDKAQLNTLIRLKSETEKLKPKLSPASKDTRPKEKRLVNDDLMQTSFERMLSLKDLEIEQWHRKHKEKIKQKEKERLRNRTCLELKVKDKEKTKHAPTESKSKELTRSRSSELTDVYSKEKQSKDVGSNRSQSVDNRNVLNLGKPSYISESGSNRSPRSEGERLGLSSRSVSMLSVASSEDSCHTVTTPRPLVEYDSDFMLEGSESQLSFSQSPFLPNAKSPALYERELEGLTELPDRLKPPYTNRLPVCHLRSSSVEDVKLITNEVRPAVEIRRCSMPSVICEPIKHFQVSEESSQGNLAVPRETCLSPKPEVSSAVPERGLSHVSDLHPNCTGSPTRSANSSYISSDVNVIKSATLVGTLIDSSMHLEPSNQVGVIPSKSWETPVDKLESLSTNDFICPDSNISDQDSSAQSFYNSENKMLREQNTDCLPPHQPELPGNSCAQDPASFLSSPQPCSFSNQPLAGADSVPKPVSLSYVVSQEPGVLQQKSAAQMASSVLDSDNNFPEDVENTFVLADIQKTNSFLPAYSESTVQEALPSFEKANTLLVLPSEKDFNGSDTAQPNTHYAFSKLTYKSSNSQEIEKGPDDTQIISHEKENKLQSLVLTQLSKCDSDLYEMNAGLPKGNLNEQDNPKHGLDSEKYSLSTEDEESQQSTLSSVENHSQQSAQPEMHKYDQLSKVELEENAEDDKTENQTPQRVTRNKASTVVNPSKPMLAGCALVAEKDNESSPRGRIRLTEEDDPQIHHPRKRKVSRVPQPVQVSPSLLQAKEKTQQSLAAIVDSLKLDEIEPYSSERANPYFEYLHIRKKIEEKRKLLCSVIPQAPQYYDEYVTFNGSYLLDGNPLSKICIPTSKDKIASYSKTSKIDRGDMGKEMREKPSMKRKLPFTVSPSRNEERDSDTDSDPGHTSENWGERLISSYRTYSEKEGPEKKKTKKEAGTKKSTPVSILFGYPLSERKQMALLMQMTARDNSPDSTPSHPSQATPAQKKTPSSSSRQKDKINKRNERGETPLHMAAIRGDVKQVKELISLGANVNVKDFAGWTPLHEACNVGYYDVAKILIAAGADVNTQGLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVAETEELELLLKREVPLSGDDESYTDSEEAQSVNPSSVDENIDSETEKDSFVCGSKILPSKAPLPSALDEYEFKDDDEEEISKMIDDRHILRKEQRRENESEAERSGLFAKQEKTFYSKSFKTKKQKPSRVLCSSTESSDEEGLQNRKISTACSVAESSHPDMQAKKEYEYKQKGKVKRKLKNQNKNKENQELKQEKEGKENSRIATLTVNTALDCSEKYREEGNFRKSFSPKDDTSLHLFHISTGKSPKHSCGLSEKQTPLKQEHTKACISPGSSEMSLQPDLTRYDNAEPESSNVKSYKHKEKNKQQKDFHIEFGEKSNAKIKDEDHNPAFENSDCTLKKMDKEGKTLKKHKLKHKEKDKEKHKKEVEGEKEKYKNKDNAKELQRSIEFDREFWKENFFKSDETEDLFLTMEHESIIEKKTKMEKNMKDDRSAKEKHVSKERNFKEEREKTKKENEKSLREEKVKDPKEEKDSVSTEKEAECCSVGVSVSQEAAGLHSSEKEMDAEKQERHTKEREKSDRRFQTKEKELDRNERKFSEKEKKIKHEHKSEREKLDFSDCTDRVREKDKLYSHQTERCHKDSEKLKNTVRKTDDRERNREKADRKHDREKPERERYLAENKEKHLEKRKQSDSSEYSKSEKVRTKDRDREGEKKEKLRDKESVNVTNLKHLQEERKSSTGDSSGKTQHEKALSLKERARDEPLKTPDGKEKDKKDIDRYKERDKRKDKAQLNTLIRLKSETEKLKPKLSPASKDTRPKEKRLVNDDLMQTSFERMLSLKDLEIEQWHRKHKEKIKQKEKERLRNRTCLELKVKDKEKTKHAPTESKSKELTRSRSSELTDVYSKEKQSKDVGSNRSQSVDNRNVLNLGKPSYISESGSNRSPRSEGERLGLSSRSVSMLSVASSEDSCHTVTTPRPLVEYDSDFMLEGSESQLSFSQSPFLPNAKSPALYERELEGLTELPDRLKPPYTNRLPVCHLRSSSVEDVKLITNEVRPAVEIRRCSMPSVICEPIKHFQVSEESSQGNLAVPRETCLSPKPEVSSAVPERGLSHVSDLHPNCTGSPTRSANSSYISSDVNVIKSATLVGTLIDSSMHLEPSNQVGVIPSKSWETPVDKLESLSTNDFICPDSNISDQDSSAQSFYNSENKMLREQNTDCLPPHQPELPGNSCAQDPASFLSSPQPCSFSNQPLAGADSVPKPVSLSYVVSQEPGVLQQKSAAQMASSVLDSDNNFPEDVENTFVLADIQKTNSFLPAYSESTVQEALPSFEKANTLLVLPSEKDFNGSDTAQPNTHYAFSKLTYKSSNSQEIEKGPDDTQIISHEKENKLQSLVLTQLSKCDSDLYEMNAGLPKGNLNEQDNPKHGLDSEKYSLSTEDEESQQSTLSSVENHSQQSAQPEMHKYDQLSKVELEENAEDDKTENQTPQRVTRNKASTVVNPSKPMLAGCALVAEKDNESSPRGRIRLTEEDDPQIHHPRKRKVSRVPQPVQVSPSLLQAKEKTQQSLAAIVDSLKLDEIEPYSSERANPYFEYLHIRKKIEEKRKLLCSVIPQAPQYYDEYVTFNGSYLLDGNPLSKICIPT
IRESfinder result
IRESfinder score
0.586368728
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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