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mmu_circAnkib1_745
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkib1_745
mm39_Chr. Position ID:
chr5|3751804|3763238|-
Gene name:
Ankib1
Transcript:
ENSMUST00000043551.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
16,15,14,13,12,11
Exon/intron offsets:
0,1087,2721,2983,4384,11303
Genomic length:
11434
Exon/intron sizes in nt:
1,79,14,66,78,71,35,130
Flanking exon/introns:
chr5:3750407-3751804|chr5:3763238-3772545
Splice length:
745
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCGTTGGAGTCAGCGAAGCCTATGAAGATGCTGCCAATTGTCTGTGGCTGTTAACTAACTCCAAGCCTTGTGCGAACTGTAAGTCTCCAATACAGAAGAACGAAGGCTGTAATCACATGCAGTGTGCCAAGTGCAAGTATGACTTTTGCTGGATTTGCCTAGAAGAATGGAAAAAACATAGTTCTTCCACTGGAGGTTACTACAGATGCACTCGCTATGAAGTCATCCAACATGTGGAGGAGCAATCCAAGGAGATGACAGTGGAGGCTGAGAAGAAACATAAACGGTTTCAGGAACTTGACAGATTTATGCACTATTATACAAGATATAAAAACCATGAGCATAGTTATCAGTTAGAACAACGCCTTCTTAAAACAGCCAAAGAAAAGATGGAGCAGTTGAGTAGAGCTCTCAAAGAAACTGAAGGAGGCTGTCCAGATACCACTTTCATCGAAGATGCAGTGCATGTTCTTCTAAAAACTCGGCGCATCCTCAAGTGTTCTTATCCATATGGATTTTTCTTAGAACCTAAAAGCACAAAGAAAGAAATTTTTGAACTAATGCAAACAGACCTGGAAATGGTCACTGAAGACCTTGCCCAGAAAGTCAATAGGCCTTATCTTCGTACACCTCGGCACAAGATCATCAGGGCAGCATGCCTTGTGCAGCAGAAAAGGCAAGAGTTCCTGGCATCTGTCGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAAGAGTTCCTGGCATCT
60.03
TCGCACAAGGCTTGGAGTTA
59.61
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGCAAGAGTTCCTGGCATC
60.03
TCGCACAAGGCTTGGAGTTA
59.61
146
PCR template sequence:
TCAGGGCAGCATGCCTTGTGCAGCAGAAAAGGCAAGAGTTCCTGGCATCTGTCGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGCAGTCGTTGGAGTCAGCGAAGCCTATGAAGATGCTGCCAATTGTCTGTGGCTGTTAACTAACTCCAAGCCTTGTGCGAACTGTAAGTCTCCAATACAGAAGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCCCAGGCGCAGTCGTTGGAGTCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKIB1_745_ORF_1
0.8948
0.133838695
0.917621847
759
ORF sequence:
ATGCTCCCAGGCGCAGTCGTTGGAGTCAGCGAAGCCTATGAAGATGCTGCCAATTGTCTGTGGCTGTTAACTAACTCCAAGCCTTGTGCGAACTGTAAGTCTCCAATACAGAAGAACGAAGGCTGTAATCACATGCAGTGTGCCAAGTGCAAGTATGACTTTTGCTGGATTTGCCTAGAAGAATGGAAAAAACATAGTTCTTCCACTGGAGGTTACTACAGATGCACTCGCTATGAAGTCATCCAACATGTGGAGGAGCAATCCAAGGAGATGACAGTGGAGGCTGAGAAGAAACATAAACGGTTTCAGGAACTTGACAGATTTATGCACTATTATACAAGATATAAAAACCATGAGCATAGTTATCAGTTAGAACAACGCCTTCTTAAAACAGCCAAAGAAAAGATGGAGCAGTTGAGTAGAGCTCTCAAAGAAACTGAAGGAGGCTGTCCAGATACCACTTTCATCGAAGATGCAGTGCATGTTCTTCTAAAAACTCGGCGCATCCTCAAGTGTTCTTATCCATATGGATTTTTCTTAGAACCTAAAAGCACAAAGAAAGAAATTTTTGAACTAATGCAAACAGACCTGGAAATGGTCACTGAAGACCTTGCCCAGAAAGTCAATAGGCCTTATCTTCGTACACCTCGGCACAAGATCATCAGGGCAGCATGCCTTGTGCAGCAGAAAAGGCAAGAGTTCCTGGCATCTGTCGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGC
Peptide sequence:
MLPGAVVGVSEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWICLEEWKKHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKTAKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQKRQEFLASVARGVAPADSPDAPRR
IRESfinder result
IRESfinder score
0.472138982
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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