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mmu_circAnkib1_666
Basic information of circular RNA
PanCircBase ID:
mmu_circAnkib1_666
mm39_Chr. Position ID:
chr5|3750355|3756323|-
Gene name:
Ankib1
Transcript:
ENSMUST00000043551.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
17,16,15,14,13,12
Exon/intron offsets:
0,1449,2536,4170,4432,5833
Genomic length:
5968
Exon/intron sizes in nt:
52,17,91,46,67,87,135
Flanking exon/introns:
chr5:3744875-3750355|chr5:3756323-3763107
Splice length:
666
Other database IDs:
CIRCpedia: MMU_CIRCpedia_219331, circAtlas: mmu-Ankib1_0030
circBase: hsa_circ_0081021, CIRCpedia: HSA_CIRCpedia_97996
Human Ortholog IDs:
Mature spliced Sequence:
TGCAAGTATGACTTTTGCTGGATTTGCCTAGAAGAATGGAAAAAACATAGTTCTTCCACTGGAGGTTACTACAGATGCACTCGCTATGAAGTCATCCAACATGTGGAGGAGCAATCCAAGGAGATGACAGTGGAGGCTGAGAAGAAACATAAACGGTTTCAGGAACTTGACAGATTTATGCACTATTATACAAGATATAAAAACCATGAGCATAGTTATCAGTTAGAACAACGCCTTCTTAAAACAGCCAAAGAAAAGATGGAGCAGTTGAGTAGAGCTCTCAAAGAAACTGAAGGAGGCTGTCCAGATACCACTTTCATCGAAGATGCAGTGCATGTTCTTCTAAAAACTCGGCGCATCCTCAAGTGTTCTTATCCATATGGATTTTTCTTAGAACCTAAAAGCACAAAGAAAGAAATTTTTGAACTAATGCAAACAGACCTGGAAATGGTCACTGAAGACCTTGCCCAGAAAGTCAATAGGCCTTATCTTCGTACACCTCGGCACAAGATCATCAGGGCAGCATGCCTTGTGCAGCAGAAAAGGCAAGAGTTCCTGGCATCTGTCGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGCAGCTTTGCCGGTGGAACATGGGATTGGGAATATTTAGGATTTGCTTCACCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GACTCACCAGATGCTCCCAG
59.82
GGATGACTTCATAGCGAGTGC
58.87
175
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGACTCACCAGATGCTCCC
59.82
GGATGACTTCATAGCGAGTGC
58.87
177
PCR template sequence:
CGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGCAGCTTTGCCGGTGGAACATGGGATTGGGAATATTTAGGATTTGCTTCACCTGAGTGCAAGTATGACTTTTGCTGGATTTGCCTAGAAGAATGGAAAAAACATAGTTCTTCCACTGGAGGTTACTACAGATGCACTCGCTATGAAGTCATCCAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-320-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCTTCACCTGAGTGCAAGTATGACT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANKIB1_666_ORF_1
0.8724
0.104286007
0.995925892
1209
ORF sequence:
ATGACAGTGGAGGCTGAGAAGAAACATAAACGGTTTCAGGAACTTGACAGATTTATGCACTATTATACAAGATATAAAAACCATGAGCATAGTTATCAGTTAGAACAACGCCTTCTTAAAACAGCCAAAGAAAAGATGGAGCAGTTGAGTAGAGCTCTCAAAGAAACTGAAGGAGGCTGTCCAGATACCACTTTCATCGAAGATGCAGTGCATGTTCTTCTAAAAACTCGGCGCATCCTCAAGTGTTCTTATCCATATGGATTTTTCTTAGAACCTAAAAGCACAAAGAAAGAAATTTTTGAACTAATGCAAACAGACCTGGAAATGGTCACTGAAGACCTTGCCCAGAAAGTCAATAGGCCTTATCTTCGTACACCTCGGCACAAGATCATCAGGGCAGCATGCCTTGTGCAGCAGAAAAGGCAAGAGTTCCTGGCATCTGTCGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGCAGCTTTGCCGGTGGAACATGGGATTGGGAATATTTAGGATTTGCTTCACCTGAGTGCAAGTATGACTTTTGCTGGATTTGCCTAGAAGAATGGAAAAAACATAGTTCTTCCACTGGAGGTTACTACAGATGCACTCGCTATGAAGTCATCCAACATGTGGAGGAGCAATCCAAGGAGATGACAGTGGAGGCTGAGAAGAAACATAAACGGTTTCAGGAACTTGACAGATTTATGCACTATTATACAAGATATAAAAACCATGAGCATAGTTATCAGTTAGAACAACGCCTTCTTAAAACAGCCAAAGAAAAGATGGAGCAGTTGAGTAGAGCTCTCAAAGAAACTGAAGGAGGCTGTCCAGATACCACTTTCATCGAAGATGCAGTGCATGTTCTTCTAAAAACTCGGCGCATCCTCAAGTGTTCTTATCCATATGGATTTTTCTTAGAACCTAAAAGCACAAAGAAAGAAATTTTTGAACTAATGCAAACAGACCTGGAAATGGTCACTGAAGACCTTGCCCAGAAAGTCAATAGGCCTTATCTTCGTACACCTCGGCACAAGATCATCAGGGCAGCATGCCTTGTGCAGCAGAAAAGGCAAGAGTTCCTGGCATCTGTCGCTCGTGGTGTTGCTCCTGCAGACTCACCAGATGCTCCCAGGCGCAGCTTTGCCGGTGGAACATGGGATTGGGAATATTTAGGATTTGCTTCACCTGAG
Peptide sequence:
MTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKTAKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQKRQEFLASVARGVAPADSPDAPRRSFAGGTWDWEYLGFASPECKYDFCWICLEEWKKHSSSTGGYYRCTRYEVIQHVEEQSKEMTVEAEKKHKRFQELDRFMHYYTRYKNHEHSYQLEQRLLKTAKEKMEQLSRALKETEGGCPDTTFIEDAVHVLLKTRRILKCSYPYGFFLEPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQKRQEFLASVARGVAPADSPDAPRRSFAGGTWDWEYLGFASPE
IRESfinder result
IRESfinder score
0.525011196
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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