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mmu_circAnk_399
Basic information of circular RNA
PanCircBase ID:
mmu_circAnk_399
mm39_Chr. Position ID:
chr15|27562809|27567693|+
Gene name:
Ank
Transcript:
ENSMUST00000022875.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,6,7
Exon/intron offsets:
0,2178,4791
Genomic length:
4884
Exon/intron sizes in nt:
171,135,93
Flanking exon/introns:
chr15:27557333-27562809|chr15:27567693-27571644
Splice length:
399
Other database IDs:
circBase: hsa_circ_0071974, circAtlas: hsa-ANKH_0011
Human Ortholog IDs:
Mature spliced Sequence:
GTTGTTTTCGTAGCCATTTTGCTTCACAGTCACCTGGAATGCCGAGAACCGCTGCTCATCCCCATCCTGTCTCTGTACATGGGTGCGCTTGTGCGCTGCACCACACTGTGCCTGGGCTACTACAGGAACATCCACGACATCATCCCCGACAGGAGCGGCCCAGAGCTGGGGGGTGATGCAACCATAAGAAAGATGCTGAGCTTCTGGTGGCCCCTGGCTCTGATCCTGGCCACGCAGCGAATCAGTCGGCCCATTGTCAACCTCTTCGTGTCCCGGGACCTTGGTGGCAGCTCTGCTGCTACAGAGGCAGTGGCCATTCTGACAGCCACCTACCCCGTGGGTCATATGCCATATGGCTGGTTGACAGAAATCCGGGCTGTCTACCCTGCTTTTGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCATTCTGACAGCCACCTA
59.75
GACAGGATGGGGATGAGCAG
59.89
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCATTCTGACAGCCACCTA
59.75
CGCACCCATGTACAGAGACA
59.75
174
PCR template sequence:
TACAGAGGCAGTGGCCATTCTGACAGCCACCTACCCCGTGGGTCATATGCCATATGGCTGGTTGACAGAAATCCGGGCTGTCTACCCTGCTTTTGACAAGGTTGTTTTCGTAGCCATTTTGCTTCACAGTCACCTGGAATGCCGAGAACCGCTGCTCATCCCCATCCTGTCTCTGTACATGGGTGCGCTTGTGCGCTGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-miR-326-3p(1), mmu-miR-324-3p(1), mmu-miR-544-5p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCTTTTGACAAGGTTGTTTTCGTAG
siRNA sets
AAAACAACCTTGTCAAAAG, AAACAACCTTGTCAAAAGC, TACGAAAACAACCTTGTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCANK_399_ORF_1
1.0741
0.395349509
0.972018636
720
ORF sequence:
ATGGGTGCGCTTGTGCGCTGCACCACACTGTGCCTGGGCTACTACAGGAACATCCACGACATCATCCCCGACAGGAGCGGCCCAGAGCTGGGGGGTGATGCAACCATAAGAAAGATGCTGAGCTTCTGGTGGCCCCTGGCTCTGATCCTGGCCACGCAGCGAATCAGTCGGCCCATTGTCAACCTCTTCGTGTCCCGGGACCTTGGTGGCAGCTCTGCTGCTACAGAGGCAGTGGCCATTCTGACAGCCACCTACCCCGTGGGTCATATGCCATATGGCTGGTTGACAGAAATCCGGGCTGTCTACCCTGCTTTTGACAAGGTTGTTTTCGTAGCCATTTTGCTTCACAGTCACCTGGAATGCCGAGAACCGCTGCTCATCCCCATCCTGTCTCTGTACATGGGTGCGCTTGTGCGCTGCACCACACTGTGCCTGGGCTACTACAGGAACATCCACGACATCATCCCCGACAGGAGCGGCCCAGAGCTGGGGGGTGATGCAACCATAAGAAAGATGCTGAGCTTCTGGTGGCCCCTGGCTCTGATCCTGGCCACGCAGCGAATCAGTCGGCCCATTGTCAACCTCTTCGTGTCCCGGGACCTTGGTGGCAGCTCTGCTGCTACAGAGGCAGTGGCCATTCTGACAGCCACCTACCCCGTGGGTCATATGCCATATGGCTGGTTGACAGAAATCCGGGCTGTCTACCCTGCTTTTGACAAG
Peptide sequence:
MGALVRCTTLCLGYYRNIHDIIPDRSGPELGGDATIRKMLSFWWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVYPAFDKVVFVAILLHSHLECREPLLIPILSLYMGALVRCTTLCLGYYRNIHDIIPDRSGPELGGDATIRKMLSFWWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVYPAFDK
IRESfinder result
IRESfinder score
0.402359078
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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