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mmu_circAlkbh3_83
Basic information of circular RNA
PanCircBase ID:
mmu_circAlkbh3_83
mm39_Chr. Position ID:
chr2|93835077|93837226|-
Gene name:
Alkbh3
Transcript:
ENSMUST00000111240.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
5,4
Exon/intron offsets:
0,2114
Genomic length:
2149
Exon/intron sizes in nt:
48,35
Flanking exon/introns:
chr2:93833501-93835077|chr2:93837226-93838383
Splice length:
83
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTGTCCGTGCAGCCCCAGAACCCAGAGTGATTGACAGGGAGGGTGTGTATGAAATCAGCCTGTCACCTACTGGTGTGTCTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAATCAGCCTGTCACCTACT
59.09
CCCTGTCAATCACTCTGGGT
59.01
73
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAATCAGCCTGTCACCTACT
59.09
AATCACTCTGGGTTCTGGGG
59
66
PCR template sequence:
GGTGTGTATGAAATCAGCCTGTCACCTACTGGTGTGTCTAGGTTGTCCGTGCAGCCCCAGAACCCAGAGTGATTGACAGGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CTGGTGTGTCTAGGTTGTCCGTGCAG
siRNA sets
ACGGACAACCTAGACACAC,CTGCACGGACAACCTAGAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.735900539
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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