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mmu_circAkap9_5379
Basic information of circular RNA
PanCircBase ID:
mmu_circAkap9_5379
mm39_Chr. Position ID:
chr5|3998680|4064079|+
Gene name:
Akap9
Transcript:
ENSMUST00000044492.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
20
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21
Exon/intron offsets:
0,3009,6111,7476,8943,11431,19899,21983,23221,24075,26918,27447,32437,43365,52724,54880,56122,56729,59663,65169
Genomic length:
65399
Exon/intron sizes in nt:
2,16,45,17,11,56,17,72,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr5:3978490-3998680|chr5:4064079-4078373
Splice length:
5379
Other database IDs:
CIRCpedia: MMU_CIRCpedia_19164, circAtlas: mmu-Akap9_0003
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
CTTGCTCGGTTTCGACAAAGAAAAGCCCAATATGATGGGGACATTCCGAAGAAACAGAAGAAGAAGAGGACGTCAAGCTCTAAACATGATTCAAGCTTACATACTGATCAACAGAGTGGTGAGCTCTGCTCGGAAAGTTCTCAGAGGGTAGACTTAGCCGGGAATCCTGATTGCTCCGGGCCAGAGAGAAAGCACGGCCAGGTCTTCTCTGCTGAACCTGAAAGTGAAATTTCTACCACTGCAGATGAATGTAGCTCGGAGGAAGAAGAATTTTCACTTGATGACTCCTCCTCTGAGCAAGGAGCTCAGTCCAGTCAGACCTGTCTTCAGATGGTAGAAAAGGAGTTGGCCGAGAAGCAGCATGATATTGAAGAGTTGACTCAGGAGTTGGAAGAGATGAGGGCCAGCTTTGGGACCGAAGGGCTGAAGCAGTTACAAGAATTTGAAGCCGCCATTAAACAGCGAGACGGCATCATAACTCAGCTCACAGCTAACTTGCAGCAAGCAAGGAGAGAGAAGGATGACACGATGGTAGAATTCTTAGAGCTGACAGAACAAAGTCAAAAACTGCAGATTCAGTTCCAGCACTTACAGGCTAATGAAACTTTGCAAAACAGCACTCTCAGCCGAACTGCGACAGATTTACTGCAGGCCAAACGACAGATCTTCACTCAACAGCAACAGCTGCAAGATTATCAGAAAAAGGAGGAGGACCTCCAAGCGCAGATTTCTTTTTTACAAGAGAAATTAAGAGCGTTTGAAATGGAAAAAGACAGAAAAATAGAAAACTTAAATGCAAAAGAAATACAGGAGAAGCAGGCACTCATTGATGAGTTGAATACAAGAGTAGTAGAAGAAGAGAAGAAAACTGTTGAGTTAAAGAATAAAGTAACAACTGCTGATGAGTTACTAGGAGGGTTACACGAACAGCTTACACAGAGGAATCAGGAGATCCAAAGCCTGAAACTAGAACTGGGCAACTCTCAGCAGAACGAGCGGAAGTGTTCAGAGGAAATCAAAGAGCTAATGAGGACAGTTGAAGAACTCCAGAAGAGAAACCTTAAAGATAGCTGGCTGGAAACTAGCGCCGTGCGAAGGGTGGAACAGGAAACCCAACGGAAATTAAGCCATCTCCAAGCAGAGCTGGATGAGATGTATGGGAAGCAAATAGTGCAAATGAAACAAGAGTTAATAAATCAGCACATGTCTCAGATAGAGGAGCTCAAATCCCAACATAAGAGAGAAATGGAGAACACCTTAAAGTCGGATACAAATGCTGCCATCAGTAAAGAACAAGTAAATTTAATGAATGCCGCCATAAATGAACTCAATGTAAGATTACAGGAGACTCATGCTCAAAAGGAGGAACTCAAGGGAGAGCTTGGCGTAGTTCTGGGAGAAAAGTCAGCTTTGCAAAGTCAGTCTAATGACCTCTTAGAAGAGGTAAGGTTTTTAAGAGAGCAAGTTCAGAAAGCTAGGCAGACAATCGCAGAGCAAGAGAACAGGCTGAGTGAGGCGCGCAAGTCCCTGAGCACAGTGGAAGACCTAAAAGCTGAGATCGTGGCTGCCTCCGAATCCAGAAAGGAACTCGAGCTCAAGCATGAAGCCGAGATTACAAATTATAAAATAAAACTTGAAATGCTAGAAAAAGAAAAAAATGCTGTGCTAGACAGAATGGCGGAATCCCAAGAAGCAGAGCTGGAGAGGCTGAGAACACAGCTCCTCTTTAGTCATGAGGAAGAATTGTCTAAACTAAAAGAAGATTTAGAAGTAGAACATCGAATAAATATTGAAAAACTTAAAGATAATTTAGGCATTCACTACAAGCAACAGATAGACGGCTTACAGAATGAAATGAATAGGAAGATGGAAAGTATGCAGTGTGAAACAGACAACCTGATAACCCAGCAGAATCAGTTAATTCTGGAAAATTCAAAGCTAAGAGATTTACAGGAATGCCTTGTTAACTCAAAATCAGAAGAAATGAATCTTCAAATCAATGAACTGCAAAAAGAGATTGAAATCCTCAAACAAGAAGAAAAGGAGAAAGGTACCCTTGAGCAGGAAGTCCAGGAGTTGCAACTTAAAACTGAACAATTGGAGAAACAGCTGAAGGAGAAGGAAGATGACCTTCAAGAAAAATGTGCACAGCTGGACGCAGAGAACAACATTCTCAAAGAGGAGAAGAGAGTCCTTGAAGACAAGTTGAAAATGTACAGTCCTTCGGAACAAGAGGAGAGATCCATTGCCGTAGATCCCAGCACAAGCAAGTCGGCAGACTCGAGGTGGCAAAAAGAAGTAGCGATGCTGAGGAAGGAGACCGAGGACCTTCAACAACAATGCCTTTATCTAAATGAAGAGATCGAGAAGCAAAGGAATACGTTTGCGTTTGCTGAAAAGAACTTTGAAGTTAACTATCAAGAGTTACAGAGGGAGTATACTTGTCTGCTCAAGATAAGAGATGATTTAGAGGCCACACAGACCAAGCAGGCATTGGAATATGAGAGCAAGCTGAGAGCGCTGGAGGAAGAGCTCCTTTCGAAAAGAGGAAATCCAGCCGCGCCAAAGGGGAAGAGTTCTGGAATTTTCCCATCTGAGACGCTGGAAATTGGGGAAGTTGTAGAAAAAGATACAACAGAGCTTATGGAGAAGCTAGAAGTAACCAAGCGAGAAAAGTTGGAGCTCTCAGAGAAAGTCTCTGGCCTTTCTGAACAACTAAAGCAGACCCATTGTACCATCAATTCTCTAAGTGCAGAGGTCAGAGCCTTAAAGCAAGAGAAGGAACAGCTTTTATTGAGATGTGGAGAACTTGAACTCCTCGCTAACCCTAGTGGAACAGAAAATGCAGCTGTCTGCCCTGTGCAGATGAGTTCTTACCAAGCTGGGCTTGTGATGGGCAAGGTCGGGGATTCTGGGGGATCTATTTCTAAAATTAGTAAAGATTTGGCTGAAGAATCAAAACCAATGATAGAAGATAAAATTCCCTTTAAAGAAAGTGGGAGAGAACAGTTGCTCTTGCCAACAAGAGCACAAAAACCGTCTCATGCGACAGTTGAACCATGTGAAAGTGAAAAACTCCAGCAAGAGCTTCATGCCCTCAAAGCCGAGCAGGATGATCTAAGGCTGCAGATGGAGGCCCAGCGCATATGCCTTTTTGTGGTTTACTCAACTCATGCGGATCAGGTTCGTGCACACATGGAAAAGGAGAGGGAGGAAGCTCTTTGCAGCCTTAAAGATGAGCTCATTTCCGCTCAACAGAAAAAGATCGACGAACTTCATAAAATGCACCAGTGCCAGCTCCAGAATTTTAAAATACAGGAGACAGGTGATGAGCCTTTACAGGTGCTCATTGAACGACTTCAACAGGCAGTGTCTGAGAAATGCTTTCACATTTCAAAGACCCTAAACAATGTTTTCGATGAATGCTATACTCCTTTAAAATGTGAAATGAATATAGAAGAGAAAGAGAATTCTGGTGTTTACACTTCTCAAAATCAAAGCCCAGAATTACAAGAGTATAGATACGAAGTTCAAGACTTTCAAGAGAGCATGCAAGTCCTTCTTGGTAAAGTGACGGAAGAATGCCGCAAACTCTCAGGACTGCAGACGCGCTTAGGCAAGATCCATGAACAACAGACAGATGGTGTGGCACTAGAGTTTGCTGAACAAAATGCGGCAGAAGAGGAAGCAGGTCTTCTGTCAGGTTGTTCTCAGAGTGCTTTACAGAGCACAGATGTCAGTCTTGAGAGCAAGGTGTCTTCTCTGCCTGCGAGTGAGAAAAGCAGAGAATGTGAGAGGCAAGTCCAAGAGTTACAGAGCCCTGTGGCTGCCGGACAGCTGCAGCTCACGGAAACCGAAGCAAACCACAGAGCAGAAACTGAGTCTTTGCAGCAGAGACTTGAGGCTGTCAGTGAGGCTCCGGTTCAGCCAAGCTTGTCCATTGATTCTGTGGTGTTTAAAGGATCTGGTGCCCAGAAACCAGTGTACTGTGGAAGCTGTCTAAGAGAGTGTGTGGATGGCACAGCAAAGTTTTCTGATAGATTCGAAGTGAGGCAAGAAACAAATATGGTTAACTTGATGGAAAAACAGTATCAAGAACGACTGGAAGAAGAAATAGCTAAGGTCATCGTATCAATGAGTATAGCATTTGCTCAACAGACGGAACTCTCTAGATTATCTGAGGGGAAAGAAAACACTATACAATCAGAACAAGCACACACTCTATGTTCTCAAAACAAACACCAATTAAATGACATCACATCACAAAGTCAAGTTGGTCTTCAGACTTTTGAGGCAACGGACAAGAATTTTAAAGAAGAATTTAAACCGCTTAGCAAAGAGTTAGGCGAATATAGAAAAGCAGTTCCTTTGTCCAGTCATGATGACCTTGATGATATACTAAAGTCAGAAGAACATGGACTGGCTATTTCAGAAGAAATATTTTCCAAAGATGAAACATTTATAGTGAGAAAATCTATGCATGATGAGGTGTTGGTGTCAAGTATGGATACTTCTAGACAGCTCATCTTAAATGAACAGTTGGAAGATATGCGGCAAGAACTTGTGCGACAATATGAAGAACACCAGCAGGCAACAGAAATGTTGAGGCAGGCCCACATGCAACAGATGGAGAGGCAACGGGAAGACCAGGAGCAGCTCCAAGAGGAAATCAAGAGACTCAACGAGCAGCTAGCCCAGAAATCCTCCATAGATACTGAACACGTGGTTTCAGAGAGAGAAAGGGTTCTATTAGAGGAGCTGGAAGCACTAAAGCAGCTGCCCCTAGCTGGAAGAAAGGAGCTGTGTTGTGAGCTGCGCCACAGCAGTACGCAAACACAGGATGGACATGACGATCAGGAAGTTGAGGAACAGACGTTAAAAGACAAGACATTGGAGAGAAGCCCTGAAGATGCTCTTCTCGATAGAAACCTGTCCAATGAAAGGTACGCTCTCAAAAAAGCTAATAATAGACTTCTGAAGATCTTGTTAGAGGTTGTCAAGACAACATCAGCTGCTGAAGAAACAATTGGCCGCCATGTTCTTGGGATTCTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGAGCTATGGATGAGTCCATACCCTCCTATCCTGGAACTGCCATAGCAACACATGACAGCATTTGGTCCAAAGTCACAGAGGAAGGAGCAGAGCTGTCACAGCGGCTCGTGAGGAGTGGTTTTGCTGGGCCTGTAATAGATCCTGAAAATGAAGAACTTATGCTGAACATCAGCTCTCGACTACAAGCAGCTGTTGAAAAACTCCTAGAAGCCATAAGTGAAACCAACACTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTCTCGACTACAAGCAGCT
59.83
AGAGCTTGACGTCCTCTTCT
58.08
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTCTCGACTACAAGCAGC
59.83
AGAGCTTGACGTCCTCTTCT
58.08
144
PCR template sequence:
AATAGATCCTGAAAATGAAGAACTTATGCTGAACATCAGCTCTCGACTACAAGCAGCTGTTGAAAAACTCCTAGAAGCCATAAGTGAAACCAACACTCAGCTTGCTCGGTTTCGACAAAGAAAAGCCCAATATGATGGGGACATTCCGAAGAAACAGAAGAAGAAGAGGACGTCAAGCTCTAAACATGATTCAAGCTTAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
40
Interacting miRNAs (#binding sites)
mmu-miR-207(4), mmu-miR-96-5p(2), mmu-miR-129-5p(2), mmu-miR-673-5p(2), mmu-miR-3470b(2), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-141-3p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-101a-3p(1), mmu-miR-335-5p(1), mmu-miR-30c-5p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-203-3p(1), mmu-miR-23a-3p(1), mmu-miR-138-5p(1), mmu-miR-139-5p(1), mmu-miR-181b-5p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-182-5p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-1904(1), mmu-miR-574-5p(1), mmu-miR-146b-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AACCAACACTCAGCTTGCTCGGTTTC
siRNA sets
AAACCGAGCAAGCTGAGTG, AACCGAGCAAGCTGAGTGT, GAAACCGAGCAAGCTGAGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAKAP9_5379_ORF_1
1.152
0.184541052
1
10428
ORF sequence:
ATGGTAGAAAAGGAGTTGGCCGAGAAGCAGCATGATATTGAAGAGTTGACTCAGGAGTTGGAAGAGATGAGGGCCAGCTTTGGGACCGAAGGGCTGAAGCAGTTACAAGAATTTGAAGCCGCCATTAAACAGCGAGACGGCATCATAACTCAGCTCACAGCTAACTTGCAGCAAGCAAGGAGAGAGAAGGATGACACGATGGTAGAATTCTTAGAGCTGACAGAACAAAGTCAAAAACTGCAGATTCAGTTCCAGCACTTACAGGCTAATGAAACTTTGCAAAACAGCACTCTCAGCCGAACTGCGACAGATTTACTGCAGGCCAAACGACAGATCTTCACTCAACAGCAACAGCTGCAAGATTATCAGAAAAAGGAGGAGGACCTCCAAGCGCAGATTTCTTTTTTACAAGAGAAATTAAGAGCGTTTGAAATGGAAAAAGACAGAAAAATAGAAAACTTAAATGCAAAAGAAATACAGGAGAAGCAGGCACTCATTGATGAGTTGAATACAAGAGTAGTAGAAGAAGAGAAGAAAACTGTTGAGTTAAAGAATAAAGTAACAACTGCTGATGAGTTACTAGGAGGGTTACACGAACAGCTTACACAGAGGAATCAGGAGATCCAAAGCCTGAAACTAGAACTGGGCAACTCTCAGCAGAACGAGCGGAAGTGTTCAGAGGAAATCAAAGAGCTAATGAGGACAGTTGAAGAACTCCAGAAGAGAAACCTTAAAGATAGCTGGCTGGAAACTAGCGCCGTGCGAAGGGTGGAACAGGAAACCCAACGGAAATTAAGCCATCTCCAAGCAGAGCTGGATGAGATGTATGGGAAGCAAATAGTGCAAATGAAACAAGAGTTAATAAATCAGCACATGTCTCAGATAGAGGAGCTCAAATCCCAACATAAGAGAGAAATGGAGAACACCTTAAAGTCGGATACAAATGCTGCCATCAGTAAAGAACAAGTAAATTTAATGAATGCCGCCATAAATGAACTCAATGTAAGATTACAGGAGACTCATGCTCAAAAGGAGGAACTCAAGGGAGAGCTTGGCGTAGTTCTGGGAGAAAAGTCAGCTTTGCAAAGTCAGTCTAATGACCTCTTAGAAGAGGTAAGGTTTTTAAGAGAGCAAGTTCAGAAAGCTAGGCAGACAATCGCAGAGCAAGAGAACAGGCTGAGTGAGGCGCGCAAGTCCCTGAGCACAGTGGAAGACCTAAAAGCTGAGATCGTGGCTGCCTCCGAATCCAGAAAGGAACTCGAGCTCAAGCATGAAGCCGAGATTACAAATTATAAAATAAAACTTGAAATGCTAGAAAAAGAAAAAAATGCTGTGCTAGACAGAATGGCGGAATCCCAAGAAGCAGAGCTGGAGAGGCTGAGAACACAGCTCCTCTTTAGTCATGAGGAAGAATTGTCTAAACTAAAAGAAGATTTAGAAGTAGAACATCGAATAAATATTGAAAAACTTAAAGATAATTTAGGCATTCACTACAAGCAACAGATAGACGGCTTACAGAATGAAATGAATAGGAAGATGGAAAGTATGCAGTGTGAAACAGACAACCTGATAACCCAGCAGAATCAGTTAATTCTGGAAAATTCAAAGCTAAGAGATTTACAGGAATGCCTTGTTAACTCAAAATCAGAAGAAATGAATCTTCAAATCAATGAACTGCAAAAAGAGATTGAAATCCTCAAACAAGAAGAAAAGGAGAAAGGTACCCTTGAGCAGGAAGTCCAGGAGTTGCAACTTAAAACTGAACAATTGGAGAAACAGCTGAAGGAGAAGGAAGATGACCTTCAAGAAAAATGTGCACAGCTGGACGCAGAGAACAACATTCTCAAAGAGGAGAAGAGAGTCCTTGAAGACAAGTTGAAAATGTACAGTCCTTCGGAACAAGAGGAGAGATCCATTGCCGTAGATCCCAGCACAAGCAAGTCGGCAGACTCGAGGTGGCAAAAAGAAGTAGCGATGCTGAGGAAGGAGACCGAGGACCTTCAACAACAATGCCTTTATCTAAATGAAGAGATCGAGAAGCAAAGGAATACGTTTGCGTTTGCTGAAAAGAACTTTGAAGTTAACTATCAAGAGTTACAGAGGGAGTATACTTGTCTGCTCAAGATAAGAGATGATTTAGAGGCCACACAGACCAAGCAGGCATTGGAATATGAGAGCAAGCTGAGAGCGCTGGAGGAAGAGCTCCTTTCGAAAAGAGGAAATCCAGCCGCGCCAAAGGGGAAGAGTTCTGGAATTTTCCCATCTGAGACGCTGGAAATTGGGGAAGTTGTAGAAAAAGATACAACAGAGCTTATGGAGAAGCTAGAAGTAACCAAGCGAGAAAAGTTGGAGCTCTCAGAGAAAGTCTCTGGCCTTTCTGAACAACTAAAGCAGACCCATTGTACCATCAATTCTCTAAGTGCAGAGGTCAGAGCCTTAAAGCAAGAGAAGGAACAGCTTTTATTGAGATGTGGAGAACTTGAACTCCTCGCTAACCCTAGTGGAACAGAAAATGCAGCTGTCTGCCCTGTGCAGATGAGTTCTTACCAAGCTGGGCTTGTGATGGGCAAGGTCGGGGATTCTGGGGGATCTATTTCTAAAATTAGTAAAGATTTGGCTGAAGAATCAAAACCAATGATAGAAGATAAAATTCCCTTTAAAGAAAGTGGGAGAGAACAGTTGCTCTTGCCAACAAGAGCACAAAAACCGTCTCATGCGACAGTTGAACCATGTGAAAGTGAAAAACTCCAGCAAGAGCTTCATGCCCTCAAAGCCGAGCAGGATGATCTAAGGCTGCAGATGGAGGCCCAGCGCATATGCCTTTTTGTGGTTTACTCAACTCATGCGGATCAGGTTCGTGCACACATGGAAAAGGAGAGGGAGGAAGCTCTTTGCAGCCTTAAAGATGAGCTCATTTCCGCTCAACAGAAAAAGATCGACGAACTTCATAAAATGCACCAGTGCCAGCTCCAGAATTTTAAAATACAGGAGACAGGTGATGAGCCTTTACAGGTGCTCATTGAACGACTTCAACAGGCAGTGTCTGAGAAATGCTTTCACATTTCAAAGACCCTAAACAATGTTTTCGATGAATGCTATACTCCTTTAAAATGTGAAATGAATATAGAAGAGAAAGAGAATTCTGGTGTTTACACTTCTCAAAATCAAAGCCCAGAATTACAAGAGTATAGATACGAAGTTCAAGACTTTCAAGAGAGCATGCAAGTCCTTCTTGGTAAAGTGACGGAAGAATGCCGCAAACTCTCAGGACTGCAGACGCGCTTAGGCAAGATCCATGAACAACAGACAGATGGTGTGGCACTAGAGTTTGCTGAACAAAATGCGGCAGAAGAGGAAGCAGGTCTTCTGTCAGGTTGTTCTCAGAGTGCTTTACAGAGCACAGATGTCAGTCTTGAGAGCAAGGTGTCTTCTCTGCCTGCGAGTGAGAAAAGCAGAGAATGTGAGAGGCAAGTCCAAGAGTTACAGAGCCCTGTGGCTGCCGGACAGCTGCAGCTCACGGAAACCGAAGCAAACCACAGAGCAGAAACTGAGTCTTTGCAGCAGAGACTTGAGGCTGTCAGTGAGGCTCCGGTTCAGCCAAGCTTGTCCATTGATTCTGTGGTGTTTAAAGGATCTGGTGCCCAGAAACCAGTGTACTGTGGAAGCTGTCTAAGAGAGTGTGTGGATGGCACAGCAAAGTTTTCTGATAGATTCGAAGTGAGGCAAGAAACAAATATGGTTAACTTGATGGAAAAACAGTATCAAGAACGACTGGAAGAAGAAATAGCTAAGGTCATCGTATCAATGAGTATAGCATTTGCTCAACAGACGGAACTCTCTAGATTATCTGAGGGGAAAGAAAACACTATACAATCAGAACAAGCACACACTCTATGTTCTCAAAACAAACACCAATTAAATGACATCACATCACAAAGTCAAGTTGGTCTTCAGACTTTTGAGGCAACGGACAAGAATTTTAAAGAAGAATTTAAACCGCTTAGCAAAGAGTTAGGCGAATATAGAAAAGCAGTTCCTTTGTCCAGTCATGATGACCTTGATGATATACTAAAGTCAGAAGAACATGGACTGGCTATTTCAGAAGAAATATTTTCCAAAGATGAAACATTTATAGTGAGAAAATCTATGCATGATGAGGTGTTGGTGTCAAGTATGGATACTTCTAGACAGCTCATCTTAAATGAACAGTTGGAAGATATGCGGCAAGAACTTGTGCGACAATATGAAGAACACCAGCAGGCAACAGAAATGTTGAGGCAGGCCCACATGCAACAGATGGAGAGGCAACGGGAAGACCAGGAGCAGCTCCAAGAGGAAATCAAGAGACTCAACGAGCAGCTAGCCCAGAAATCCTCCATAGATACTGAACACGTGGTTTCAGAGAGAGAAAGGGTTCTATTAGAGGAGCTGGAAGCACTAAAGCAGCTGCCCCTAGCTGGAAGAAAGGAGCTGTGTTGTGAGCTGCGCCACAGCAGTACGCAAACACAGGATGGACATGACGATCAGGAAGTTGAGGAACAGACGTTAAAAGACAAGACATTGGAGAGAAGCCCTGAAGATGCTCTTCTCGATAGAAACCTGTCCAATGAAAGGTACGCTCTCAAAAAAGCTAATAATAGACTTCTGAAGATCTTGTTAGAGGTTGTCAAGACAACATCAGCTGCTGAAGAAACAATTGGCCGCCATGTTCTTGGGATTCTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGAGCTATGGATGAGTCCATACCCTCCTATCCTGGAACTGCCATAGCAACACATGACAGCATTTGGTCCAAAGTCACAGAGGAAGGAGCAGAGCTGTCACAGCGGCTCGTGAGGAGTGGTTTTGCTGGGCCTGTAATAGATCCTGAAAATGAAGAACTTATGCTGAACATCAGCTCTCGACTACAAGCAGCTGTTGAAAAACTCCTAGAAGCCATAAGTGAAACCAACACTCAGCTTGCTCGGTTTCGACAAAGAAAAGCCCAATATGATGGGGACATTCCGAAGAAACAGAAGAAGAAGAGGACGTCAAGCTCTAAACATGATTCAAGCTTACATACTGATCAACAGAGTGGTGAGCTCTGCTCGGAAAGTTCTCAGAGGGTAGACTTAGCCGGGAATCCTGATTGCTCCGGGCCAGAGAGAAAGCACGGCCAGGTCTTCTCTGCTGAACCTGAAAGTGAAATTTCTACCACTGCAGATGAATGTAGCTCGGAGGAAGAAGAATTTTCACTTGATGACTCCTCCTCTGAGCAAGGAGCTCAGTCCAGTCAGACCTGTCTTCAGATGGTAGAAAAGGAGTTGGCCGAGAAGCAGCATGATATTGAAGAGTTGACTCAGGAGTTGGAAGAGATGAGGGCCAGCTTTGGGACCGAAGGGCTGAAGCAGTTACAAGAATTTGAAGCCGCCATTAAACAGCGAGACGGCATCATAACTCAGCTCACAGCTAACTTGCAGCAAGCAAGGAGAGAGAAGGATGACACGATGGTAGAATTCTTAGAGCTGACAGAACAAAGTCAAAAACTGCAGATTCAGTTCCAGCACTTACAGGCTAATGAAACTTTGCAAAACAGCACTCTCAGCCGAACTGCGACAGATTTACTGCAGGCCAAACGACAGATCTTCACTCAACAGCAACAGCTGCAAGATTATCAGAAAAAGGAGGAGGACCTCCAAGCGCAGATTTCTTTTTTACAAGAGAAATTAAGAGCGTTTGAAATGGAAAAAGACAGAAAAATAGAAAACTTAAATGCAAAAGAAATACAGGAGAAGCAGGCACTCATTGATGAGTTGAATACAAGAGTAGTAGAAGAAGAGAAGAAAACTGTTGAGTTAAAGAATAAAGTAACAACTGCTGATGAGTTACTAGGAGGGTTACACGAACAGCTTACACAGAGGAATCAGGAGATCCAAAGCCTGAAACTAGAACTGGGCAACTCTCAGCAGAACGAGCGGAAGTGTTCAGAGGAAATCAAAGAGCTAATGAGGACAGTTGAAGAACTCCAGAAGAGAAACCTTAAAGATAGCTGGCTGGAAACTAGCGCCGTGCGAAGGGTGGAACAGGAAACCCAACGGAAATTAAGCCATCTCCAAGCAGAGCTGGATGAGATGTATGGGAAGCAAATAGTGCAAATGAAACAAGAGTTAATAAATCAGCACATGTCTCAGATAGAGGAGCTCAAATCCCAACATAAGAGAGAAATGGAGAACACCTTAAAGTCGGATACAAATGCTGCCATCAGTAAAGAACAAGTAAATTTAATGAATGCCGCCATAAATGAACTCAATGTAAGATTACAGGAGACTCATGCTCAAAAGGAGGAACTCAAGGGAGAGCTTGGCGTAGTTCTGGGAGAAAAGTCAGCTTTGCAAAGTCAGTCTAATGACCTCTTAGAAGAGGTAAGGTTTTTAAGAGAGCAAGTTCAGAAAGCTAGGCAGACAATCGCAGAGCAAGAGAACAGGCTGAGTGAGGCGCGCAAGTCCCTGAGCACAGTGGAAGACCTAAAAGCTGAGATCGTGGCTGCCTCCGAATCCAGAAAGGAACTCGAGCTCAAGCATGAAGCCGAGATTACAAATTATAAAATAAAACTTGAAATGCTAGAAAAAGAAAAAAATGCTGTGCTAGACAGAATGGCGGAATCCCAAGAAGCAGAGCTGGAGAGGCTGAGAACACAGCTCCTCTTTAGTCATGAGGAAGAATTGTCTAAACTAAAAGAAGATTTAGAAGTAGAACATCGAATAAATATTGAAAAACTTAAAGATAATTTAGGCATTCACTACAAGCAACAGATAGACGGCTTACAGAATGAAATGAATAGGAAGATGGAAAGTATGCAGTGTGAAACAGACAACCTGATAACCCAGCAGAATCAGTTAATTCTGGAAAATTCAAAGCTAAGAGATTTACAGGAATGCCTTGTTAACTCAAAATCAGAAGAAATGAATCTTCAAATCAATGAACTGCAAAAAGAGATTGAAATCCTCAAACAAGAAGAAAAGGAGAAAGGTACCCTTGAGCAGGAAGTCCAGGAGTTGCAACTTAAAACTGAACAATTGGAGAAACAGCTGAAGGAGAAGGAAGATGACCTTCAAGAAAAATGTGCACAGCTGGACGCAGAGAACAACATTCTCAAAGAGGAGAAGAGAGTCCTTGAAGACAAGTTGAAAATGTACAGTCCTTCGGAACAAGAGGAGAGATCCATTGCCGTAGATCCCAGCACAAGCAAGTCGGCAGACTCGAGGTGGCAAAAAGAAGTAGCGATGCTGAGGAAGGAGACCGAGGACCTTCAACAACAATGCCTTTATCTAAATGAAGAGATCGAGAAGCAAAGGAATACGTTTGCGTTTGCTGAAAAGAACTTTGAAGTTAACTATCAAGAGTTACAGAGGGAGTATACTTGTCTGCTCAAGATAAGAGATGATTTAGAGGCCACACAGACCAAGCAGGCATTGGAATATGAGAGCAAGCTGAGAGCGCTGGAGGAAGAGCTCCTTTCGAAAAGAGGAAATCCAGCCGCGCCAAAGGGGAAGAGTTCTGGAATTTTCCCATCTGAGACGCTGGAAATTGGGGAAGTTGTAGAAAAAGATACAACAGAGCTTATGGAGAAGCTAGAAGTAACCAAGCGAGAAAAGTTGGAGCTCTCAGAGAAAGTCTCTGGCCTTTCTGAACAACTAAAGCAGACCCATTGTACCATCAATTCTCTAAGTGCAGAGGTCAGAGCCTTAAAGCAAGAGAAGGAACAGCTTTTATTGAGATGTGGAGAACTTGAACTCCTCGCTAACCCTAGTGGAACAGAAAATGCAGCTGTCTGCCCTGTGCAGATGAGTTCTTACCAAGCTGGGCTTGTGATGGGCAAGGTCGGGGATTCTGGGGGATCTATTTCTAAAATTAGTAAAGATTTGGCTGAAGAATCAAAACCAATGATAGAAGATAAAATTCCCTTTAAAGAAAGTGGGAGAGAACAGTTGCTCTTGCCAACAAGAGCACAAAAACCGTCTCATGCGACAGTTGAACCATGTGAAAGTGAAAAACTCCAGCAAGAGCTTCATGCCCTCAAAGCCGAGCAGGATGATCTAAGGCTGCAGATGGAGGCCCAGCGCATATGCCTTTTTGTGGTTTACTCAACTCATGCGGATCAGGTTCGTGCACACATGGAAAAGGAGAGGGAGGAAGCTCTTTGCAGCCTTAAAGATGAGCTCATTTCCGCTCAACAGAAAAAGATCGACGAACTTCATAAAATGCACCAGTGCCAGCTCCAGAATTTTAAAATACAGGAGACAGGTGATGAGCCTTTACAGGTGCTCATTGAACGACTTCAACAGGCAGTGTCTGAGAAATGCTTTCACATTTCAAAGACCCTAAACAATGTTTTCGATGAATGCTATACTCCTTTAAAATGTGAAATGAATATAGAAGAGAAAGAGAATTCTGGTGTTTACACTTCTCAAAATCAAAGCCCAGAATTACAAGAGTATAGATACGAAGTTCAAGACTTTCAAGAGAGCATGCAAGTCCTTCTTGGTAAAGTGACGGAAGAATGCCGCAAACTCTCAGGACTGCAGACGCGCTTAGGCAAGATCCATGAACAACAGACAGATGGTGTGGCACTAGAGTTTGCTGAACAAAATGCGGCAGAAGAGGAAGCAGGTCTTCTGTCAGGTTGTTCTCAGAGTGCTTTACAGAGCACAGATGTCAGTCTTGAGAGCAAGGTGTCTTCTCTGCCTGCGAGTGAGAAAAGCAGAGAATGTGAGAGGCAAGTCCAAGAGTTACAGAGCCCTGTGGCTGCCGGACAGCTGCAGCTCACGGAAACCGAAGCAAACCACAGAGCAGAAACTGAGTCTTTGCAGCAGAGACTTGAGGCTGTCAGTGAGGCTCCGGTTCAGCCAAGCTTGTCCATTGATTCTGTGGTGTTTAAAGGATCTGGTGCCCAGAAACCAGTGTACTGTGGAAGCTGTCTAAGAGAGTGTGTGGATGGCACAGCAAAGTTTTCTGATAGATTCGAAGTGAGGCAAGAAACAAATATGGTTAACTTGATGGAAAAACAGTATCAAGAACGACTGGAAGAAGAAATAGCTAAGGTCATCGTATCAATGAGTATAGCATTTGCTCAACAGACGGAACTCTCTAGATTATCTGAGGGGAAAGAAAACACTATACAATCAGAACAAGCACACACTCTATGTTCTCAAAACAAACACCAATTAAATGACATCACATCACAAAGTCAAGTTGGTCTTCAGACTTTTGAGGCAACGGACAAGAATTTTAAAGAAGAATTTAAACCGCTTAGCAAAGAGTTAGGCGAATATAGAAAAGCAGTTCCTTTGTCCAGTCATGATGACCTTGATGATATACTAAAGTCAGAAGAACATGGACTGGCTATTTCAGAAGAAATATTTTCCAAAGATGAAACATTTATAGTGAGAAAATCTATGCATGATGAGGTGTTGGTGTCAAGTATGGATACTTCTAGACAGCTCATCTTAAATGAACAGTTGGAAGATATGCGGCAAGAACTTGTGCGACAATATGAAGAACACCAGCAGGCAACAGAAATGTTGAGGCAGGCCCACATGCAACAGATGGAGAGGCAACGGGAAGACCAGGAGCAGCTCCAAGAGGAAATCAAGAGACTCAACGAGCAGCTAGCCCAGAAATCCTCCATAGATACTGAACACGTGGTTTCAGAGAGAGAAAGGGTTCTATTAGAGGAGCTGGAAGCACTAAAGCAGCTGCCCCTAGCTGGAAGAAAGGAGCTGTGTTGTGAGCTGCGCCACAGCAGTACGCAAACACAGGATGGACATGACGATCAGGAAGTTGAGGAACAGACGTTAAAAGACAAGACATTGGAGAGAAGCCCTGAAGATGCTCTTCTCGATAGAAACCTGTCCAATGAAAGGTACGCTCTCAAAAAAGCTAATAATAGACTTCTGAAGATCTTGTTAGAGGTTGTCAAGACAACATCAGCTGCTGAAGAAACAATTGGCCGCCATGTTCTTGGGATTCTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGAGCTATGGATGAGTCCATACCCTCCTATCCTGGAACTGCCATAGCAACACATGACAGCATTTGGTCCAAAGTCACAGAGGAAGGAGCAGAGCTGTCACAGCGGCTCGTGAGGAGTGGTTTTGCTGGGCCTGTAATAGATCCTGAAAATGAAGAACTTATGCTGAACATCAGCTCTCGACTACAAGCAGCTGTTGAAAAACTCCTAGAAGCCATAAGTGAAACCAACACTCAG
Peptide sequence:
MVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEESKPMIEDKIPFKESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEAQRICLFVVYSTHADQVRAHMEKEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEPLQVLIERLQQAVSEKCFHISKTLNNVFDECYTPLKCEMNIEEKENSGVYTSQNQSPELQEYRYEVQDFQESMQVLLGKVTEECRKLSGLQTRLGKIHEQQTDGVALEFAEQNAAEEEAGLLSGCSQSALQSTDVSLESKVSSLPASEKSRECERQVQELQSPVAAGQLQLTETEANHRAETESLQQRLEAVSEAPVQPSLSIDSVVFKGSGAQKPVYCGSCLRECVDGTAKFSDRFEVRQETNMVNLMEKQYQERLEEEIAKVIVSMSIAFAQQTELSRLSEGKENTIQSEQAHTLCSQNKHQLNDITSQSQVGLQTFEATDKNFKEEFKPLSKELGEYRKAVPLSSHDDLDDILKSEEHGLAISEEIFSKDETFIVRKSMHDEVLVSSMDTSRQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQKSSIDTEHVVSERERVLLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDESIPSYPGTAIATHDSIWSKVTEEGAELSQRLVRSGFAGPVIDPENEELMLNISSRLQAAVEKLLEAISETNTQLARFRQRKAQYDGDIPKKQKKKRTSSSKHDSSLHTDQQSGELCSESSQRVDLAGNPDCSGPERKHGQVFSAEPESEISTTADECSSEEEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEESKPMIEDKIPFKESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEAQRICLFVVYSTHADQVRAHMEKEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEPLQVLIERLQQAVSEKCFHISKTLNNVFDECYTPLKCEMNIEEKENSGVYTSQNQSPELQEYRYEVQDFQESMQVLLGKVTEECRKLSGLQTRLGKIHEQQTDGVALEFAEQNAAEEEAGLLSGCSQSALQSTDVSLESKVSSLPASEKSRECERQVQELQSPVAAGQLQLTETEANHRAETESLQQRLEAVSEAPVQPSLSIDSVVFKGSGAQKPVYCGSCLRECVDGTAKFSDRFEVRQETNMVNLMEKQYQERLEEEIAKVIVSMSIAFAQQTELSRLSEGKENTIQSEQAHTLCSQNKHQLNDITSQSQVGLQTFEATDKNFKEEFKPLSKELGEYRKAVPLSSHDDLDDILKSEEHGLAISEEIFSKDETFIVRKSMHDEVLVSSMDTSRQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQKSSIDTEHVVSERERVLLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDESIPSYPGTAIATHDSIWSKVTEEGAELSQRLVRSGFAGPVIDPENEELMLNISSRLQAAVEKLLEAISETNTQ
IRESfinder result
IRESfinder score
0.464174675
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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