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mmu_circAkap9_5149
Basic information of circular RNA
PanCircBase ID:
mmu_circAkap9_5149
mm39_Chr. Position ID:
chr5|3998680|4058549|+
Gene name:
Akap9
Transcript:
ENSMUST00000044492.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
19
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,3009,6111,7476,8943,11431,19899,21983,23221,24075,26918,27447,32437,43365,52724,54880,56122,56729,59663
Genomic length:
59869
Exon/intron sizes in nt:
21,64,51,71,15,61,77,20,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr5:3978490-3998680|chr5:4058549-4063849
Splice length:
5149
Other database IDs:
CIRCpedia: MMU_CIRCpedia_19163, circAtlas: mmu-Akap9_0034
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_163070
Human Ortholog IDs:
Mature spliced Sequence:
CTTGCTCGGTTTCGACAAAGAAAAGCCCAATATGATGGGGACATTCCGAAGAAACAGAAGAAGAAGAGGACGTCAAGCTCTAAACATGATTCAAGCTTACATACTGATCAACAGAGTGGTGAGCTCTGCTCGGAAAGTTCTCAGAGGGTAGACTTAGCCGGGAATCCTGATTGCTCCGGGCCAGAGAGAAAGCACGGCCAGGTCTTCTCTGCTGAACCTGAAAGTGAAATTTCTACCACTGCAGATGAATGTAGCTCGGAGGAAGAAGAATTTTCACTTGATGACTCCTCCTCTGAGCAAGGAGCTCAGTCCAGTCAGACCTGTCTTCAGATGGTAGAAAAGGAGTTGGCCGAGAAGCAGCATGATATTGAAGAGTTGACTCAGGAGTTGGAAGAGATGAGGGCCAGCTTTGGGACCGAAGGGCTGAAGCAGTTACAAGAATTTGAAGCCGCCATTAAACAGCGAGACGGCATCATAACTCAGCTCACAGCTAACTTGCAGCAAGCAAGGAGAGAGAAGGATGACACGATGGTAGAATTCTTAGAGCTGACAGAACAAAGTCAAAAACTGCAGATTCAGTTCCAGCACTTACAGGCTAATGAAACTTTGCAAAACAGCACTCTCAGCCGAACTGCGACAGATTTACTGCAGGCCAAACGACAGATCTTCACTCAACAGCAACAGCTGCAAGATTATCAGAAAAAGGAGGAGGACCTCCAAGCGCAGATTTCTTTTTTACAAGAGAAATTAAGAGCGTTTGAAATGGAAAAAGACAGAAAAATAGAAAACTTAAATGCAAAAGAAATACAGGAGAAGCAGGCACTCATTGATGAGTTGAATACAAGAGTAGTAGAAGAAGAGAAGAAAACTGTTGAGTTAAAGAATAAAGTAACAACTGCTGATGAGTTACTAGGAGGGTTACACGAACAGCTTACACAGAGGAATCAGGAGATCCAAAGCCTGAAACTAGAACTGGGCAACTCTCAGCAGAACGAGCGGAAGTGTTCAGAGGAAATCAAAGAGCTAATGAGGACAGTTGAAGAACTCCAGAAGAGAAACCTTAAAGATAGCTGGCTGGAAACTAGCGCCGTGCGAAGGGTGGAACAGGAAACCCAACGGAAATTAAGCCATCTCCAAGCAGAGCTGGATGAGATGTATGGGAAGCAAATAGTGCAAATGAAACAAGAGTTAATAAATCAGCACATGTCTCAGATAGAGGAGCTCAAATCCCAACATAAGAGAGAAATGGAGAACACCTTAAAGTCGGATACAAATGCTGCCATCAGTAAAGAACAAGTAAATTTAATGAATGCCGCCATAAATGAACTCAATGTAAGATTACAGGAGACTCATGCTCAAAAGGAGGAACTCAAGGGAGAGCTTGGCGTAGTTCTGGGAGAAAAGTCAGCTTTGCAAAGTCAGTCTAATGACCTCTTAGAAGAGGTAAGGTTTTTAAGAGAGCAAGTTCAGAAAGCTAGGCAGACAATCGCAGAGCAAGAGAACAGGCTGAGTGAGGCGCGCAAGTCCCTGAGCACAGTGGAAGACCTAAAAGCTGAGATCGTGGCTGCCTCCGAATCCAGAAAGGAACTCGAGCTCAAGCATGAAGCCGAGATTACAAATTATAAAATAAAACTTGAAATGCTAGAAAAAGAAAAAAATGCTGTGCTAGACAGAATGGCGGAATCCCAAGAAGCAGAGCTGGAGAGGCTGAGAACACAGCTCCTCTTTAGTCATGAGGAAGAATTGTCTAAACTAAAAGAAGATTTAGAAGTAGAACATCGAATAAATATTGAAAAACTTAAAGATAATTTAGGCATTCACTACAAGCAACAGATAGACGGCTTACAGAATGAAATGAATAGGAAGATGGAAAGTATGCAGTGTGAAACAGACAACCTGATAACCCAGCAGAATCAGTTAATTCTGGAAAATTCAAAGCTAAGAGATTTACAGGAATGCCTTGTTAACTCAAAATCAGAAGAAATGAATCTTCAAATCAATGAACTGCAAAAAGAGATTGAAATCCTCAAACAAGAAGAAAAGGAGAAAGGTACCCTTGAGCAGGAAGTCCAGGAGTTGCAACTTAAAACTGAACAATTGGAGAAACAGCTGAAGGAGAAGGAAGATGACCTTCAAGAAAAATGTGCACAGCTGGACGCAGAGAACAACATTCTCAAAGAGGAGAAGAGAGTCCTTGAAGACAAGTTGAAAATGTACAGTCCTTCGGAACAAGAGGAGAGATCCATTGCCGTAGATCCCAGCACAAGCAAGTCGGCAGACTCGAGGTGGCAAAAAGAAGTAGCGATGCTGAGGAAGGAGACCGAGGACCTTCAACAACAATGCCTTTATCTAAATGAAGAGATCGAGAAGCAAAGGAATACGTTTGCGTTTGCTGAAAAGAACTTTGAAGTTAACTATCAAGAGTTACAGAGGGAGTATACTTGTCTGCTCAAGATAAGAGATGATTTAGAGGCCACACAGACCAAGCAGGCATTGGAATATGAGAGCAAGCTGAGAGCGCTGGAGGAAGAGCTCCTTTCGAAAAGAGGAAATCCAGCCGCGCCAAAGGGGAAGAGTTCTGGAATTTTCCCATCTGAGACGCTGGAAATTGGGGAAGTTGTAGAAAAAGATACAACAGAGCTTATGGAGAAGCTAGAAGTAACCAAGCGAGAAAAGTTGGAGCTCTCAGAGAAAGTCTCTGGCCTTTCTGAACAACTAAAGCAGACCCATTGTACCATCAATTCTCTAAGTGCAGAGGTCAGAGCCTTAAAGCAAGAGAAGGAACAGCTTTTATTGAGATGTGGAGAACTTGAACTCCTCGCTAACCCTAGTGGAACAGAAAATGCAGCTGTCTGCCCTGTGCAGATGAGTTCTTACCAAGCTGGGCTTGTGATGGGCAAGGTCGGGGATTCTGGGGGATCTATTTCTAAAATTAGTAAAGATTTGGCTGAAGAATCAAAACCAATGATAGAAGATAAAATTCCCTTTAAAGAAAGTGGGAGAGAACAGTTGCTCTTGCCAACAAGAGCACAAAAACCGTCTCATGCGACAGTTGAACCATGTGAAAGTGAAAAACTCCAGCAAGAGCTTCATGCCCTCAAAGCCGAGCAGGATGATCTAAGGCTGCAGATGGAGGCCCAGCGCATATGCCTTTTTGTGGTTTACTCAACTCATGCGGATCAGGTTCGTGCACACATGGAAAAGGAGAGGGAGGAAGCTCTTTGCAGCCTTAAAGATGAGCTCATTTCCGCTCAACAGAAAAAGATCGACGAACTTCATAAAATGCACCAGTGCCAGCTCCAGAATTTTAAAATACAGGAGACAGGTGATGAGCCTTTACAGGTGCTCATTGAACGACTTCAACAGGCAGTGTCTGAGAAATGCTTTCACATTTCAAAGACCCTAAACAATGTTTTCGATGAATGCTATACTCCTTTAAAATGTGAAATGAATATAGAAGAGAAAGAGAATTCTGGTGTTTACACTTCTCAAAATCAAAGCCCAGAATTACAAGAGTATAGATACGAAGTTCAAGACTTTCAAGAGAGCATGCAAGTCCTTCTTGGTAAAGTGACGGAAGAATGCCGCAAACTCTCAGGACTGCAGACGCGCTTAGGCAAGATCCATGAACAACAGACAGATGGTGTGGCACTAGAGTTTGCTGAACAAAATGCGGCAGAAGAGGAAGCAGGTCTTCTGTCAGGTTGTTCTCAGAGTGCTTTACAGAGCACAGATGTCAGTCTTGAGAGCAAGGTGTCTTCTCTGCCTGCGAGTGAGAAAAGCAGAGAATGTGAGAGGCAAGTCCAAGAGTTACAGAGCCCTGTGGCTGCCGGACAGCTGCAGCTCACGGAAACCGAAGCAAACCACAGAGCAGAAACTGAGTCTTTGCAGCAGAGACTTGAGGCTGTCAGTGAGGCTCCGGTTCAGCCAAGCTTGTCCATTGATTCTGTGGTGTTTAAAGGATCTGGTGCCCAGAAACCAGTGTACTGTGGAAGCTGTCTAAGAGAGTGTGTGGATGGCACAGCAAAGTTTTCTGATAGATTCGAAGTGAGGCAAGAAACAAATATGGTTAACTTGATGGAAAAACAGTATCAAGAACGACTGGAAGAAGAAATAGCTAAGGTCATCGTATCAATGAGTATAGCATTTGCTCAACAGACGGAACTCTCTAGATTATCTGAGGGGAAAGAAAACACTATACAATCAGAACAAGCACACACTCTATGTTCTCAAAACAAACACCAATTAAATGACATCACATCACAAAGTCAAGTTGGTCTTCAGACTTTTGAGGCAACGGACAAGAATTTTAAAGAAGAATTTAAACCGCTTAGCAAAGAGTTAGGCGAATATAGAAAAGCAGTTCCTTTGTCCAGTCATGATGACCTTGATGATATACTAAAGTCAGAAGAACATGGACTGGCTATTTCAGAAGAAATATTTTCCAAAGATGAAACATTTATAGTGAGAAAATCTATGCATGATGAGGTGTTGGTGTCAAGTATGGATACTTCTAGACAGCTCATCTTAAATGAACAGTTGGAAGATATGCGGCAAGAACTTGTGCGACAATATGAAGAACACCAGCAGGCAACAGAAATGTTGAGGCAGGCCCACATGCAACAGATGGAGAGGCAACGGGAAGACCAGGAGCAGCTCCAAGAGGAAATCAAGAGACTCAACGAGCAGCTAGCCCAGAAATCCTCCATAGATACTGAACACGTGGTTTCAGAGAGAGAAAGGGTTCTATTAGAGGAGCTGGAAGCACTAAAGCAGCTGCCCCTAGCTGGAAGAAAGGAGCTGTGTTGTGAGCTGCGCCACAGCAGTACGCAAACACAGGATGGACATGACGATCAGGAAGTTGAGGAACAGACGTTAAAAGACAAGACATTGGAGAGAAGCCCTGAAGATGCTCTTCTCGATAGAAACCTGTCCAATGAAAGGTACGCTCTCAAAAAAGCTAATAATAGACTTCTGAAGATCTTGTTAGAGGTTGTCAAGACAACATCAGCTGCTGAAGAAACAATTGGCCGCCATGTTCTTGGGATTCTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGTCAGACAGCTAGCAGC
59.75
TGTTTCTTCGGAATGTCCCCA
59.58
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGTCAGACAGCTAGCAGC
59.75
AGAGCTTGACGTCCTCTTCT
58.08
165
PCR template sequence:
CTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGAGCTTGCTCGGTTTCGACAAAGAAAAGCCCAATATGATGGGGACATTCCGAAGAAACAGAAGAAGAAGAGGACGTCAAGCTCTAAACATGATTCAAGCTTAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
38
Interacting miRNAs (#binding sites)
mmu-miR-207(4), mmu-miR-96-5p(2), mmu-miR-129-5p(2), mmu-miR-3470b(2), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-141-3p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-135a-5p(1), mmu-miR-101a-3p(1), mmu-miR-335-5p(1), mmu-miR-30c-5p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-222-3p(1), mmu-miR-203-3p(1), mmu-miR-23a-3p(1), mmu-miR-138-5p(1), mmu-miR-139-5p(1), mmu-miR-181b-5p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-182-5p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-107-3p(1), mmu-miR-1187(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-1904(1), mmu-miR-574-5p(1), mmu-miR-146b-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GATTGTGCAAGAGCTTGCTCGGTTTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCAKAP9_5149_ORF_1
1.1511
0.183849117
1
5262
ORF sequence:
ATGTTCTTGGGATTCTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGAGCTTGCTCGGTTTCGACAAAGAAAAGCCCAATATGATGGGGACATTCCGAAGAAACAGAAGAAGAAGAGGACGTCAAGCTCTAAACATGATTCAAGCTTACATACTGATCAACAGAGTGGTGAGCTCTGCTCGGAAAGTTCTCAGAGGGTAGACTTAGCCGGGAATCCTGATTGCTCCGGGCCAGAGAGAAAGCACGGCCAGGTCTTCTCTGCTGAACCTGAAAGTGAAATTTCTACCACTGCAGATGAATGTAGCTCGGAGGAAGAAGAATTTTCACTTGATGACTCCTCCTCTGAGCAAGGAGCTCAGTCCAGTCAGACCTGTCTTCAGATGGTAGAAAAGGAGTTGGCCGAGAAGCAGCATGATATTGAAGAGTTGACTCAGGAGTTGGAAGAGATGAGGGCCAGCTTTGGGACCGAAGGGCTGAAGCAGTTACAAGAATTTGAAGCCGCCATTAAACAGCGAGACGGCATCATAACTCAGCTCACAGCTAACTTGCAGCAAGCAAGGAGAGAGAAGGATGACACGATGGTAGAATTCTTAGAGCTGACAGAACAAAGTCAAAAACTGCAGATTCAGTTCCAGCACTTACAGGCTAATGAAACTTTGCAAAACAGCACTCTCAGCCGAACTGCGACAGATTTACTGCAGGCCAAACGACAGATCTTCACTCAACAGCAACAGCTGCAAGATTATCAGAAAAAGGAGGAGGACCTCCAAGCGCAGATTTCTTTTTTACAAGAGAAATTAAGAGCGTTTGAAATGGAAAAAGACAGAAAAATAGAAAACTTAAATGCAAAAGAAATACAGGAGAAGCAGGCACTCATTGATGAGTTGAATACAAGAGTAGTAGAAGAAGAGAAGAAAACTGTTGAGTTAAAGAATAAAGTAACAACTGCTGATGAGTTACTAGGAGGGTTACACGAACAGCTTACACAGAGGAATCAGGAGATCCAAAGCCTGAAACTAGAACTGGGCAACTCTCAGCAGAACGAGCGGAAGTGTTCAGAGGAAATCAAAGAGCTAATGAGGACAGTTGAAGAACTCCAGAAGAGAAACCTTAAAGATAGCTGGCTGGAAACTAGCGCCGTGCGAAGGGTGGAACAGGAAACCCAACGGAAATTAAGCCATCTCCAAGCAGAGCTGGATGAGATGTATGGGAAGCAAATAGTGCAAATGAAACAAGAGTTAATAAATCAGCACATGTCTCAGATAGAGGAGCTCAAATCCCAACATAAGAGAGAAATGGAGAACACCTTAAAGTCGGATACAAATGCTGCCATCAGTAAAGAACAAGTAAATTTAATGAATGCCGCCATAAATGAACTCAATGTAAGATTACAGGAGACTCATGCTCAAAAGGAGGAACTCAAGGGAGAGCTTGGCGTAGTTCTGGGAGAAAAGTCAGCTTTGCAAAGTCAGTCTAATGACCTCTTAGAAGAGGTAAGGTTTTTAAGAGAGCAAGTTCAGAAAGCTAGGCAGACAATCGCAGAGCAAGAGAACAGGCTGAGTGAGGCGCGCAAGTCCCTGAGCACAGTGGAAGACCTAAAAGCTGAGATCGTGGCTGCCTCCGAATCCAGAAAGGAACTCGAGCTCAAGCATGAAGCCGAGATTACAAATTATAAAATAAAACTTGAAATGCTAGAAAAAGAAAAAAATGCTGTGCTAGACAGAATGGCGGAATCCCAAGAAGCAGAGCTGGAGAGGCTGAGAACACAGCTCCTCTTTAGTCATGAGGAAGAATTGTCTAAACTAAAAGAAGATTTAGAAGTAGAACATCGAATAAATATTGAAAAACTTAAAGATAATTTAGGCATTCACTACAAGCAACAGATAGACGGCTTACAGAATGAAATGAATAGGAAGATGGAAAGTATGCAGTGTGAAACAGACAACCTGATAACCCAGCAGAATCAGTTAATTCTGGAAAATTCAAAGCTAAGAGATTTACAGGAATGCCTTGTTAACTCAAAATCAGAAGAAATGAATCTTCAAATCAATGAACTGCAAAAAGAGATTGAAATCCTCAAACAAGAAGAAAAGGAGAAAGGTACCCTTGAGCAGGAAGTCCAGGAGTTGCAACTTAAAACTGAACAATTGGAGAAACAGCTGAAGGAGAAGGAAGATGACCTTCAAGAAAAATGTGCACAGCTGGACGCAGAGAACAACATTCTCAAAGAGGAGAAGAGAGTCCTTGAAGACAAGTTGAAAATGTACAGTCCTTCGGAACAAGAGGAGAGATCCATTGCCGTAGATCCCAGCACAAGCAAGTCGGCAGACTCGAGGTGGCAAAAAGAAGTAGCGATGCTGAGGAAGGAGACCGAGGACCTTCAACAACAATGCCTTTATCTAAATGAAGAGATCGAGAAGCAAAGGAATACGTTTGCGTTTGCTGAAAAGAACTTTGAAGTTAACTATCAAGAGTTACAGAGGGAGTATACTTGTCTGCTCAAGATAAGAGATGATTTAGAGGCCACACAGACCAAGCAGGCATTGGAATATGAGAGCAAGCTGAGAGCGCTGGAGGAAGAGCTCCTTTCGAAAAGAGGAAATCCAGCCGCGCCAAAGGGGAAGAGTTCTGGAATTTTCCCATCTGAGACGCTGGAAATTGGGGAAGTTGTAGAAAAAGATACAACAGAGCTTATGGAGAAGCTAGAAGTAACCAAGCGAGAAAAGTTGGAGCTCTCAGAGAAAGTCTCTGGCCTTTCTGAACAACTAAAGCAGACCCATTGTACCATCAATTCTCTAAGTGCAGAGGTCAGAGCCTTAAAGCAAGAGAAGGAACAGCTTTTATTGAGATGTGGAGAACTTGAACTCCTCGCTAACCCTAGTGGAACAGAAAATGCAGCTGTCTGCCCTGTGCAGATGAGTTCTTACCAAGCTGGGCTTGTGATGGGCAAGGTCGGGGATTCTGGGGGATCTATTTCTAAAATTAGTAAAGATTTGGCTGAAGAATCAAAACCAATGATAGAAGATAAAATTCCCTTTAAAGAAAGTGGGAGAGAACAGTTGCTCTTGCCAACAAGAGCACAAAAACCGTCTCATGCGACAGTTGAACCATGTGAAAGTGAAAAACTCCAGCAAGAGCTTCATGCCCTCAAAGCCGAGCAGGATGATCTAAGGCTGCAGATGGAGGCCCAGCGCATATGCCTTTTTGTGGTTTACTCAACTCATGCGGATCAGGTTCGTGCACACATGGAAAAGGAGAGGGAGGAAGCTCTTTGCAGCCTTAAAGATGAGCTCATTTCCGCTCAACAGAAAAAGATCGACGAACTTCATAAAATGCACCAGTGCCAGCTCCAGAATTTTAAAATACAGGAGACAGGTGATGAGCCTTTACAGGTGCTCATTGAACGACTTCAACAGGCAGTGTCTGAGAAATGCTTTCACATTTCAAAGACCCTAAACAATGTTTTCGATGAATGCTATACTCCTTTAAAATGTGAAATGAATATAGAAGAGAAAGAGAATTCTGGTGTTTACACTTCTCAAAATCAAAGCCCAGAATTACAAGAGTATAGATACGAAGTTCAAGACTTTCAAGAGAGCATGCAAGTCCTTCTTGGTAAAGTGACGGAAGAATGCCGCAAACTCTCAGGACTGCAGACGCGCTTAGGCAAGATCCATGAACAACAGACAGATGGTGTGGCACTAGAGTTTGCTGAACAAAATGCGGCAGAAGAGGAAGCAGGTCTTCTGTCAGGTTGTTCTCAGAGTGCTTTACAGAGCACAGATGTCAGTCTTGAGAGCAAGGTGTCTTCTCTGCCTGCGAGTGAGAAAAGCAGAGAATGTGAGAGGCAAGTCCAAGAGTTACAGAGCCCTGTGGCTGCCGGACAGCTGCAGCTCACGGAAACCGAAGCAAACCACAGAGCAGAAACTGAGTCTTTGCAGCAGAGACTTGAGGCTGTCAGTGAGGCTCCGGTTCAGCCAAGCTTGTCCATTGATTCTGTGGTGTTTAAAGGATCTGGTGCCCAGAAACCAGTGTACTGTGGAAGCTGTCTAAGAGAGTGTGTGGATGGCACAGCAAAGTTTTCTGATAGATTCGAAGTGAGGCAAGAAACAAATATGGTTAACTTGATGGAAAAACAGTATCAAGAACGACTGGAAGAAGAAATAGCTAAGGTCATCGTATCAATGAGTATAGCATTTGCTCAACAGACGGAACTCTCTAGATTATCTGAGGGGAAAGAAAACACTATACAATCAGAACAAGCACACACTCTATGTTCTCAAAACAAACACCAATTAAATGACATCACATCACAAAGTCAAGTTGGTCTTCAGACTTTTGAGGCAACGGACAAGAATTTTAAAGAAGAATTTAAACCGCTTAGCAAAGAGTTAGGCGAATATAGAAAAGCAGTTCCTTTGTCCAGTCATGATGACCTTGATGATATACTAAAGTCAGAAGAACATGGACTGGCTATTTCAGAAGAAATATTTTCCAAAGATGAAACATTTATAGTGAGAAAATCTATGCATGATGAGGTGTTGGTGTCAAGTATGGATACTTCTAGACAGCTCATCTTAAATGAACAGTTGGAAGATATGCGGCAAGAACTTGTGCGACAATATGAAGAACACCAGCAGGCAACAGAAATGTTGAGGCAGGCCCACATGCAACAGATGGAGAGGCAACGGGAAGACCAGGAGCAGCTCCAAGAGGAAATCAAGAGACTCAACGAGCAGCTAGCCCAGAAATCCTCCATAGATACTGAACACGTGGTTTCAGAGAGAGAAAGGGTTCTATTAGAGGAGCTGGAAGCACTAAAGCAGCTGCCCCTAGCTGGAAGAAAGGAGCTGTGTTGTGAGCTGCGCCACAGCAGTACGCAAACACAGGATGGACATGACGATCAGGAAGTTGAGGAACAGACGTTAAAAGACAAGACATTGGAGAGAAGCCCTGAAGATGCTCTTCTCGATAGAAACCTGTCCAATGAAAGGTACGCTCTCAAAAAAGCTAATAATAGACTTCTGAAGATCTTGTTAGAGGTTGTCAAGACAACATCAGCTGCTGAAGAAACAATTGGCCGCCATGTTCTTGGGATTCTGGACCGATCTAGTAAAGGTCAGACAGCTAGCAGCCTGCTTTGGAGGTCAGAAGCAGACGCATCCGCCACGACTTGTGCACCAGAAGATTGTGCAAGA
Peptide sequence:
MFLGFWTDLVKVRQLAACFGGQKQTHPPRLVHQKIVQELARFRQRKAQYDGDIPKKQKKKRTSSSKHDSSLHTDQQSGELCSESSQRVDLAGNPDCSGPERKHGQVFSAEPESEISTTADECSSEEEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEESKPMIEDKIPFKESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEAQRICLFVVYSTHADQVRAHMEKEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEPLQVLIERLQQAVSEKCFHISKTLNNVFDECYTPLKCEMNIEEKENSGVYTSQNQSPELQEYRYEVQDFQESMQVLLGKVTEECRKLSGLQTRLGKIHEQQTDGVALEFAEQNAAEEEAGLLSGCSQSALQSTDVSLESKVSSLPASEKSRECERQVQELQSPVAAGQLQLTETEANHRAETESLQQRLEAVSEAPVQPSLSIDSVVFKGSGAQKPVYCGSCLRECVDGTAKFSDRFEVRQETNMVNLMEKQYQERLEEEIAKVIVSMSIAFAQQTELSRLSEGKENTIQSEQAHTLCSQNKHQLNDITSQSQVGLQTFEATDKNFKEEFKPLSKELGEYRKAVPLSSHDDLDDILKSEEHGLAISEEIFSKDETFIVRKSMHDEVLVSSMDTSRQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQKSSIDTEHVVSERERVLLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCAR
IRESfinder result
IRESfinder score
0.465083181
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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