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mmu_circAI480526_217
Basic information of circular RNA
PanCircBase ID:
mmu_circAI480526_217
mm39_Chr. Position ID:
chr5|123276017|123278036|-
Gene name:
AI480526
Transcript:
ENSMUST00000160321.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,1914
Genomic length:
2019
Exon/intron sizes in nt:
1,12,105
Flanking exon/introns:
chr5:123272955-123276017|chr5:123278036-123278849
Splice length:
217
Other database IDs:
circBase: hsa_circ_0029021, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_7232
Human Ortholog IDs:
Mature spliced Sequence:
AGCACTAAACAGCCCTCAGCGAAGCCGCCTTTTTGCCAGCCCAACCCTGGAAAGTTTGCAGTCGTGGAAGGAGCAGAAATACCACGAGTGTAACTTACAAAGAAGGTCTTGGCCGGAGACCGGAGCCATGTCTGTGTTATCCCCACTGTAGACAATCCTTGCTTCCTCTGGACATCTGGAGCAGGCCCAATTTGACTGAGAGCCTTCCCCCACTAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCGGAGCCATGTCTGTGTTA
59.75
AAACTTTCCAGGGTTGGGCT
59.74
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCGGAGCCATGTCTGTGTTA
59.75
TTCTGCTCCTTCCACGACTG
59.68
176
PCR template sequence:
GACCGGAGCCATGTCTGTGTTATCCCCACTGTAGACAATCCTTGCTTCCTCTGGACATCTGGAGCAGGCCCAATTTGACTGAGAGCCTTCCCCCACTAAGAGCACTAAACAGCCCTCAGCGAAGCCGCCTTTTTGCCAGCCCAACCCTGGAAAGTTTGCAGTCGTGGAAGGAGCAGAAATACCACGAGTGTAACTTACAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-1904(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCCCCCACTAAGAGCACTAAACAGC
siRNA sets
GTTTAGTGCTCTTAGTGGG, TGTTTAGTGCTCTTAGTGG, CTGTTTAGTGCTCTTAGTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.631794856
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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