top of page

mmu_circAhi1_272

Basic information of circular RNA
PanCircBase ID:

mmu_circAhi1_272

mm39_Chr. Position ID:

chr10|20862868|20864583|+

Gene name:

Ahi1

Transcript:

ENSMUST00000105525.12

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

2

Exon/intron indexes:

14,15

Exon/intron offsets:

0,1574

Genomic length:

1715

Exon/intron sizes in nt:

131,141

Flanking exon/introns:

chr10:20860322-20862868|chr10:20864583-20876404

Splice length:

272

Other database IDs:

CIRCpedia: MMU_CIRCpedia_217571

circAtlas: hsa-AHI1_0079, CIRCpedia: HSA_CIRCpedia_146846

Human Ortholog IDs:
Mature spliced Sequence:

ATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGACGCCGTGCGGGACTCTGCTCTTTTCTGGGAGTGAGGATGGGATAGTATACGTTTGGAACCCAGAGACAGGAGAACAAGTGGCAATGTACTCTGACCTGCCATTCAAGTCCACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GTTGCCTTCTGTGCCTTTGG

59.97

AGAAAAGAGCAGAGTCCCGC

60.04

149

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GGTTGCCTTCTGTGCCTTTG

59.97

AGAAAAGAGCAGAGTCCCGC

60.04

150

PCR template sequence:

ACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGGATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGACGCCGTGCGGGACTCTGCTCTTTTCTGGGAGTGAGGAT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

1

Interacting miRNAs (#binding sites)

mmu-miR-540-3p(1)

siRNAs for circular RNA silencing
Junction sequence

TATGATTTCCAGGATTGGCAGCCAGG

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCAHI1_272_ORF_1

0.667

0.101513847

0.096516129

189

ORF sequence:

ATGTACTCTGACCTGCCATTCAAGTCCACAATCCGAGACATCTCTTACCACCCCCTGGAGAATATGGTTGCCTTCTGTGCCTTTGGACAGAGCGAGCCGATTCTTCTTTATATTTATGATTTCCAGGATTGGCAGCCAGGAAATTTGTGGGTGCAGCAAATTACCGTGAGAAGATCCATAGCACCTTGA

Peptide sequence:

MYSDLPFKSTIRDISYHPLENMVAFCAFGQSEPILLYIYDFQDWQPGNLWVQQITVRRSIAP

IRESfinder result

IRESfinder score

0.793112434

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page