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mmu_circAdrm1_211
Basic information of circular RNA
PanCircBase ID:
mmu_circAdrm1_211
mm39_Chr. Position ID:
chr2|179815702|179816188|+
Gene name:
Adrm1
Transcript:
ENSMUST00000061437.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,5
Exon/intron offsets:
0,399
Genomic length:
486
Exon/intron sizes in nt:
124,87
Flanking exon/introns:
chr2:179814765-179815702|chr2:179816188-179816657
Splice length:
211
Other database IDs:
CIRCpedia: MMU_CIRCpedia_39963
circBase: hsa_circ_0061058
Human Ortholog IDs:
Mature spliced Sequence:
GAGCCCAAGACTGACCAAGATGAGGAGCACTGCCGGAAAGTCAACGAGTGTCTGAACAACCCCCCCATGCCTGGGTCACTGGGAGCAAGTGGGAGTAGTGGCCATGAGCTTTCAGCACTGGGCGGTGAGGGTGGCCTGCAGAGCCTGTTGGGGAACATGAGTCACAGCCAGCTTATGCAGCTCATCGGACCAGCCGGCCTGGGAGGACTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGAACATGAGTCACAGCCA
59.96
TACTCCCACTTGCTCCCAGT
60.18
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGAACATGAGTCACAGCCA
59.96
ACTACTCCCACTTGCTCCCA
60.18
160
PCR template sequence:
TCAGCACTGGGCGGTGAGGGTGGCCTGCAGAGCCTGTTGGGGAACATGAGTCACAGCCAGCTTATGCAGCTCATCGGACCAGCCGGCCTGGGAGGACTGGGAGCCCAAGACTGACCAAGATGAGGAGCACTGCCGGAAAGTCAACGAGTGTCTGAACAACCCCCCCATGCCTGGGTCACTGGGAGCAAGTGGGAGTAGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-34a-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGGAGGACTGGGAGCCCAAGACTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADRM1_211_ORF_1
0.827
0.160179116
0.128669227
159
ORF sequence:
ATGCCTGGGTCACTGGGAGCAAGTGGGAGTAGTGGCCATGAGCTTTCAGCACTGGGCGGTGAGGGTGGCCTGCAGAGCCTGTTGGGGAACATGAGTCACAGCCAGCTTATGCAGCTCATCGGACCAGCCGGCCTGGGAGGACTGGGAGCCCAAGACTGA
Peptide sequence:
MPGSLGASGSSGHELSALGGEGGLQSLLGNMSHSQLMQLIGPAGLGGLGAQD
IRESfinder result
IRESfinder score
0.337481533
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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