top of page
mmu_circAdk_171
Basic information of circular RNA
PanCircBase ID:
mmu_circAdk_171
mm39_Chr. Position ID:
chr14|21368080|21368251|+
Gene name:
Adk
Transcript:
ENSMUST00000045376.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
171
Exon/intron sizes in nt:
171
Flanking exon/introns:
chr14:21290639-21368080|chr14:21368251-21419138
Splice length:
171
Other database IDs:
CIRCpedia: MMU_CIRCpedia_13205, circAtlas: mmu-Adk_0011
circAtlas: hsa-ADK_0022
Human Ortholog IDs:
Mature spliced Sequence:
GGCTTTTTTCTCACAGTCTCCCCAGAGTCGGTATTGAAAGTGGCTCGCTATGCTGCCGAGAACAACAGGGTCTTCACTTTGAACCTGTCTGCACCGTTCATTAGCCAGTTCTTCAAGGAAGCCTTGATGGACGTCATGCCTTATGTTGATATCCTCTTTGGAAATGAGACG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCACCGTTCATTAGCCAGT
59.96
AGCATAGCGAGCCACTTTCA
59.75
136
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCACCGTTCATTAGCCAGT
59.96
AAGACCCTGTTGTTCTCGGC
60.25
156
PCR template sequence:
GTCTGCACCGTTCATTAGCCAGTTCTTCAAGGAAGCCTTGATGGACGTCATGCCTTATGTTGATATCCTCTTTGGAAATGAGACGGGCTTTTTTCTCACAGTCTCCCCAGAGTCGGTATTGAAAGTGGCTCGCTATGCTGCCGAGAACAACAGGGTCTTCACTTTGAACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-10a-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGAAATGAGACGGGCTTTTTTCTCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADK_171_ORF_1
1.1794
0.33005588
0.462653726
216
ORF sequence:
ATGGACGTCATGCCTTATGTTGATATCCTCTTTGGAAATGAGACGGGCTTTTTTCTCACAGTCTCCCCAGAGTCGGTATTGAAAGTGGCTCGCTATGCTGCCGAGAACAACAGGGTCTTCACTTTGAACCTGTCTGCACCGTTCATTAGCCAGTTCTTCAAGGAAGCCTTGATGGACGTCATGCCTTATGTTGATATCCTCTTTGGAAATGAGACG
Peptide sequence:
MDVMPYVDILFGNETGFFLTVSPESVLKVARYAAENNRVFTLNLSAPFISQFFKEALMDVMPYVDILFGNET
IRESfinder result
IRESfinder score
0.786170641
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
RPF, cORF, m6A
mmu_circAdk_003
Evidence
Peptide sequence:
MDVMPYVDILFGNETGFFLTVSPESVLKVARYAAENNRVFTLNLSAPFISQFFKEALMDVMPYVDILFGNETGFFLTVSPESVLKVARYAAENNRVFTLNLSAPFISQFFKEAL
bottom of page