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mmu_circAdipor2_292
Basic information of circular RNA
PanCircBase ID:
mmu_circAdipor2_292
mm39_Chr. Position ID:
chr6|119338788|119342341|-
Gene name:
Adipor2
Transcript:
ENSMUST00000032272.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,3
Exon/intron offsets:
0,3433
Genomic length:
3553
Exon/intron sizes in nt:
1,72,120
Flanking exon/introns:
chr6:119336498-119338788|chr6:119342341-119347110
Splice length:
292
Other database IDs:
CIRCpedia: MMU_CIRCpedia_4724, circAtlas: mmu-Adipor2_0006
circBase: hsa_circ_0098064, circAtlas: hsa-ADIPOR2_0009, CIRCpedia: HSA_CIRCpedia_70524
Human Ortholog IDs:
Mature spliced Sequence:
AGCCCGGAGGAGCCCGAGTGTCATGATGACAATTCCCAGGAAGATGAAGGGTTTATGGGCATGTCCCCGCTCCTACAGGCCCATCATGCTATGGAACGAATGGAAGAGTTTGTTTGTAAGGTGTGGGAAGGCCGATGGCGAGTGATCCCTCACGATGTGCTACCGGATTGGCTTAAGGATAATGACTTCCTTCTCCATGGACACCGGCCTCCTATGCCTTCCTTTCGGGCCTGTTTTAAGAGCATTTTTAGAATACACACAGAGACGGGCAACATTTGGACACATCTCCTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGCCTGTTTTAAGAGCA
59.6
CCATAGCATGATGGGCCTGT
59.89
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCGGGCCTGTTTTAAGAGCA
59.6
CATGATGGGCCTGTAGGAGC
60.25
156
PCR template sequence:
CTCCATGGACACCGGCCTCCTATGCCTTCCTTTCGGGCCTGTTTTAAGAGCATTTTTAGAATACACACAGAGACGGGCAACATTTGGACACATCTCCTAGAGCCCGGAGGAGCCCGAGTGTCATGATGACAATTCCCAGGAAGATGAAGGGTTTATGGGCATGTCCCCGCTCCTACAGGCCCATCATGCTATGGAACGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-205-5p(1), mmu-miR-433-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACACATCTCCTAGAGCCCGGAGGAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADIPOR2_292_ORF_1
0.7447
0.077982408
0.161384157
264
ORF sequence:
ATGGGCATGTCCCCGCTCCTACAGGCCCATCATGCTATGGAACGAATGGAAGAGTTTGTTTGTAAGGTGTGGGAAGGCCGATGGCGAGTGATCCCTCACGATGTGCTACCGGATTGGCTTAAGGATAATGACTTCCTTCTCCATGGACACCGGCCTCCTATGCCTTCCTTTCGGGCCTGTTTTAAGAGCATTTTTAGAATACACACAGAGACGGGCAACATTTGGACACATCTCCTAGAGCCCGGAGGAGCCCGAGTGTCATGA
Peptide sequence:
MGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDFLLHGHRPPMPSFRACFKSIFRIHTETGNIWTHLLEPGGARVS
IRESfinder result
IRESfinder score
0.242010707
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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