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mmu_circAdgre1_423
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgre1_423
mm39_Chr. Position ID:
chr17|57708904|57709861|+
Gene name:
Adgre1
Transcript:
ENSMUST00000086763.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
3,4,5
Exon/intron offsets:
0,596,837
Genomic length:
957
Exon/intron sizes in nt:
14,71,56,120
Flanking exon/introns:
chr17:57668734-57708904|chr17:57709861-57713833
Splice length:
423
Other database IDs:
CIRCpedia: MMU_CIRCpedia_216959, circAtlas: mmu-Emr1_0005
Human Ortholog IDs:
Mature spliced Sequence:
GTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACTGACACCACAGACAGTTATTACTGCACCTGTAAACGAGGCTTCCTGTCCAGCAATGGACAAACCAACTTTCAAGGCCCAGGAGTGGAATGTCAAGATGTTAACGAATGTCTTCAAAGTGACTCACCTTGTGGTCCTAACTCAGTCTGCACCAATATCCTGGGGAGAGCCAAGTGCAGCTGTCTTAGAGGCTTCTCTTCTTCCACTGGGAAAGACTGGATTCTGGGAAGTTTGGATAATTTTCTCTGCGCAGATGTTGATGAGTGTCTGACAATTGGGATCTGCCCTAAGTATTCCAACTGCTCTAACTCTGTGGGAAGCTACAGCTGTACCTGTCAACCAGGCTTTGTCTTGAATGGCTCCATTTGTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCTGTGGGAAGCTACAGC
59.39
AAGCCTCGTTTACAGGTGCA
59.89
160
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCTGTGGGAAGCTACAGC
59.39
AGCCTCGTTTACAGGTGCAG
60.32
159
PCR template sequence:
ATTGGGATCTGCCCTAAGTATTCCAACTGCTCTAACTCTGTGGGAAGCTACAGCTGTACCTGTCAACCAGGCTTTGTCTTGAATGGCTCCATTTGTGAAGGTGTGAATGAGTGTCAAGATACTACCACTTGCCCAGCTTATGCCACCTGCACTGACACCACAGACAGTTATTACTGCACCTGTAAACGAGGCTTCCTGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-152-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCCATTTGTGAAGGTGTGAATGAGTG
siRNA sets
CACTCATTCACACCTTCAC,TCACACCTTCACAAATGGA,ACTCATTCACACCTTCACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.625377971
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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