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mmu_circAdgb_1243
Basic information of circular RNA
PanCircBase ID:
mmu_circAdgb_1243
mm39_Chr. Position ID:
chr10|10298409|10325873|-
Gene name:
Adgb
Transcript:
ENSMUST00000179956.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,3933,8405,8616,10747,13268,19819,20728,23491,27301
Genomic length:
27464
Exon/intron sizes in nt:
95,135,130,118,87,140,210,72,93,163
Flanking exon/introns:
chr10:10287632-10298409|chr10:10325873-10347984
Splice length:
1243
Other database IDs:
circAtlas: mmu-Adgb_0014
Human Ortholog IDs:
Mature spliced Sequence:
TCTCTACCATTTTGGCAGCAATGTGCCACCGGGTTCTTTTGAACAGAAGAAGGGAAAGTTCCCCATCTGGCCAGAGTGGAGCGAGGCAGACATAAATGCTGAAAAGTGGGATGCAGGCAAAGGCGGGAAGGAGAAGGACAAGACCGCCAAGAGCCCCATCTTTCACTTTTTCGAAGACCCTGAGGGAAAGATTGAATTACCACAGTCATTGAAAGTATTCTCCTGGAAACGTCCGCAAGATTTTATATTTAGCAGAACTCCTGTAGTTGTGAAAAATGAAATCACATTTGACTTATTTTCACCAAATGAACATTTACTCTGCAGTGAGCTTATGAGGTGGATCATCAGCGAAATCTATGCTGTGTGGAAGATATTCAATGGTGGGATTCTGAGCAATTACCACAAGGGGAATTTGGGGGAGCTTCCTATTCTGCCCTGGAAACCCTGGGAACACATATACTCTCTCTGCAAGGCCGTGAAGGGTCATGTGCCTTTGTTCAACAGCTACGGGAAGTATGTCGTCAAACTTTACTGGATGGGTTGTTGGAGAAAGATTACTGTGGATGACTTCCTGCCATTTGATGAGGAGAACAATCTCTTGCTTCCAGCTACATCCTATGAATTTGAACTCTGGCCAATGCTACTGTCGAAAGCTATCATTAAGCTGGCAAATGTTGACGTCCATGTAGCACACAGGAGAGAGCTAGGAGAACTCACAGTAATCCACGCTCTGACTGGGTGGTTGCCTGAAGTCATCCCTCTTCACCCAGCATATGTGGACAGAGTTTGGGAGCTCTTGAAGGAAATACTGCCTGAGTTTAAGCTCACAGAAGAGCCCAGTTCTGAAAGCAAAATCACAACGATAGACAACAAACTGAAGGAAGATGGCAAGGACGGGAAGGATGGGAAGGATGGCAAGGATGGGAAGGATGGCAAGGACAGCAAGGACTTCAAGTTGGAAGTCTCCCTTACAAACCTGAAGATTCCCGAGAAGGTCGACAGAGCTGCAAAGGAGAAAGCAGATGCAAGAGACCTTGGGAAGAAGAATAAGAAGGATGGAGAGAAGGAGAAGGAAAAATTCAAATTTTCACTCCATGGTTCGAGACCCTCATCAGATGTTCAGTACTCTATGCAGTCCTTGTCAGAGTGTTCCTCAGCAATACAGTTACCTCACATGGTCGTATATGCCACCTTTACACCACTCTATTTGTTTGAAAACAAAATCTTTTCATTAGAGAAGATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCACCTTTACACCACTCT
58.86
TTATGTCTGCCTCGCTCCAC
59.82
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCACCTTTACACCACTCT
58.86
TATGTCTGCCTCGCTCCACT
60.68
152
PCR template sequence:
AGAGTGTTCCTCAGCAATACAGTTACCTCACATGGTCGTATATGCCACCTTTACACCACTCTATTTGTTTGAAAACAAAATCTTTTCATTAGAGAAGATGTCTCTACCATTTTGGCAGCAATGTGCCACCGGGTTCTTTTGAACAGAAGAAGGGAAAGTTCCCCATCTGGCCAGAGTGGAGCGAGGCAGACATAAATGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-207(3), mmu-miR-137-3p(1), mmu-miR-150-5p(1), mmu-miR-217-5p(1), mmu-miR-324-5p(1), mmu-miR-1198-5p(1), mmu-miR-669d-5p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTAGAGAAGATGTCTCTACCATTTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADGB_1243_ORF_1
1.093
0.171316906
0.986825467
954
ORF sequence:
ATGAGGTGGATCATCAGCGAAATCTATGCTGTGTGGAAGATATTCAATGGTGGGATTCTGAGCAATTACCACAAGGGGAATTTGGGGGAGCTTCCTATTCTGCCCTGGAAACCCTGGGAACACATATACTCTCTCTGCAAGGCCGTGAAGGGTCATGTGCCTTTGTTCAACAGCTACGGGAAGTATGTCGTCAAACTTTACTGGATGGGTTGTTGGAGAAAGATTACTGTGGATGACTTCCTGCCATTTGATGAGGAGAACAATCTCTTGCTTCCAGCTACATCCTATGAATTTGAACTCTGGCCAATGCTACTGTCGAAAGCTATCATTAAGCTGGCAAATGTTGACGTCCATGTAGCACACAGGAGAGAGCTAGGAGAACTCACAGTAATCCACGCTCTGACTGGGTGGTTGCCTGAAGTCATCCCTCTTCACCCAGCATATGTGGACAGAGTTTGGGAGCTCTTGAAGGAAATACTGCCTGAGTTTAAGCTCACAGAAGAGCCCAGTTCTGAAAGCAAAATCACAACGATAGACAACAAACTGAAGGAAGATGGCAAGGACGGGAAGGATGGGAAGGATGGCAAGGATGGGAAGGATGGCAAGGACAGCAAGGACTTCAAGTTGGAAGTCTCCCTTACAAACCTGAAGATTCCCGAGAAGGTCGACAGAGCTGCAAAGGAGAAAGCAGATGCAAGAGACCTTGGGAAGAAGAATAAGAAGGATGGAGAGAAGGAGAAGGAAAAATTCAAATTTTCACTCCATGGTTCGAGACCCTCATCAGATGTTCAGTACTCTATGCAGTCCTTGTCAGAGTGTTCCTCAGCAATACAGTTACCTCACATGGTCGTATATGCCACCTTTACACCACTCTATTTGTTTGAAAACAAAATCTTTTCATTAGAGAAGATGTCTCTACCATTTTGGCAGCAATGTGCCACCGGGTTCTTTTGA
Peptide sequence:
MRWIISEIYAVWKIFNGGILSNYHKGNLGELPILPWKPWEHIYSLCKAVKGHVPLFNSYGKYVVKLYWMGCWRKITVDDFLPFDEENNLLLPATSYEFELWPMLLSKAIIKLANVDVHVAHRRELGELTVIHALTGWLPEVIPLHPAYVDRVWELLKEILPEFKLTEEPSSESKITTIDNKLKEDGKDGKDGKDGKDGKDGKDSKDFKLEVSLTNLKIPEKVDRAAKEKADARDLGKKNKKDGEKEKEKFKFSLHGSRPSSDVQYSMQSLSECSSAIQLPHMVVYATFTPLYLFENKIFSLEKMSLPFWQQCATGFF
IRESfinder result
IRESfinder score
0.573736724
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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