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mmu_circAdam10_960
Basic information of circular RNA
PanCircBase ID:
mmu_circAdam10_960
mm39_Chr. Position ID:
chr9|70610568|70655548|+
Gene name:
Adam10
Transcript:
ENSMUST00000140205.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
2,3,4,5,6,7,8
Exon/intron offsets:
0,15371,19326,36788,40564,42947,44796
Genomic length:
44980
Exon/intron sizes in nt:
151,119,159,101,153,93,184
Flanking exon/introns:
chr9:70586541-70610568|chr9:70655548-70661443
Splice length:
960
Other database IDs:
circBase: mmu_circ_0015848, CIRCpedia: MMU_CIRCpedia_27555, circAtlas: mmu-Adam10_0006
circAtlas: hsa-ADAM10_0022, CIRCpedia: HSA_CIRCpedia_361651
Human Ortholog IDs:
Mature spliced Sequence:
GTCAGTATGGAAATCCTTTAAATAAATATATTAGACATTATGAAGGATTATCTTACAATGTGGATTCATTACACCAAAAACACCAGCGTGCCAAACGAGCAGTCTCACATGAGGACCAGTTTTTACTTCTAGATTTCCATGCTCATGGAAGACAGTTCAACCTACGAATGAAGAGGGACACTTCCCTTTTTAGTGATGAATTTAAAGTAGAAACATCAAATAAAGTACTTGATTATGATACCTCTCATATTTACACTGGACATATTTATGGTGAAGAAGGAAGCTTTAGTCATGGGTCTGTCATTGATGGAAGATTTGAAGGTTTCATCAAGACTCGTGGTGGCACGTTTTACATTGAGCCAGCAGAGAGATACATTAAAGATCGAATCCTGCCATTTCACTCTGTCATTTATCATGAAGATGATATTAACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGAGGAAGTACCAAATGACTGGAGTAGAGGAAGGAGCCCGGGCACATCCAGAGAAGCATGCTGCTAGTAGTGGTCCTGAGCTCCTGAGGAAAAAACGCACAACTCTGGCTGAAAGAAATACTTGTCAGCTCTATATCCAGACAGATCACCTGTTCTTTAAATACTATGGAACACGAGAAGCTGTGATTGCTCAGATATCCAGTCATGTTAAAGCAATTGATACAATTTACCAGACTACAGACTTCTCCGGAATCCGTAACATCAGCTTCATGGTGAAACGCATAAGAATCAATACAACCTCTGATGAAAAAGACCCTACAAATCCTTTCCGTTTCCCAAATATTGGTGTGGAGAAGTTCCTGGAGTTGAATTCTGAGCAGAATCATGATGACTACTGCCTGGCCTATGTCTTCACAGACCGGGATTTTGATGATGGTGTTCTTGGTCTGGCCTGGGTTGGAGCACCTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTGGCCTATGTCTTCACA
59.75
CACGCTGGTGTTTTTGGTGT
59.83
165
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCTGGCCTATGTCTTCAC
59.75
CACGCTGGTGTTTTTGGTGT
59.83
166
PCR template sequence:
TCTGAGCAGAATCATGATGACTACTGCCTGGCCTATGTCTTCACAGACCGGGATTTTGATGATGGTGTTCTTGGTCTGGCCTGGGTTGGAGCACCTTCAGGTCAGTATGGAAATCCTTTAAATAAATATATTAGACATTATGAAGGATTATCTTACAATGTGGATTCATTACACCAAAAACACCAGCGTGCCAAACGAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(2), mmu-miR-322-5p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-18a-5p(1), mmu-miR-149-5p(1), mmu-miR-433-3p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GGAGCACCTTCAGGTCAGTATGGAAA
siRNA sets
TTCCATACTGACCTGAAGG, TTTCCATACTGACCTGAAG, ATACTGACCTGAAGGTGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCADAM10_960_ORF_1
1.01
0.144121299
0.999945786
1752
ORF sequence:
ATGAAGAGGGACACTTCCCTTTTTAGTGATGAATTTAAAGTAGAAACATCAAATAAAGTACTTGATTATGATACCTCTCATATTTACACTGGACATATTTATGGTGAAGAAGGAAGCTTTAGTCATGGGTCTGTCATTGATGGAAGATTTGAAGGTTTCATCAAGACTCGTGGTGGCACGTTTTACATTGAGCCAGCAGAGAGATACATTAAAGATCGAATCCTGCCATTTCACTCTGTCATTTATCATGAAGATGATATTAACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGAGGAAGTACCAAATGACTGGAGTAGAGGAAGGAGCCCGGGCACATCCAGAGAAGCATGCTGCTAGTAGTGGTCCTGAGCTCCTGAGGAAAAAACGCACAACTCTGGCTGAAAGAAATACTTGTCAGCTCTATATCCAGACAGATCACCTGTTCTTTAAATACTATGGAACACGAGAAGCTGTGATTGCTCAGATATCCAGTCATGTTAAAGCAATTGATACAATTTACCAGACTACAGACTTCTCCGGAATCCGTAACATCAGCTTCATGGTGAAACGCATAAGAATCAATACAACCTCTGATGAAAAAGACCCTACAAATCCTTTCCGTTTCCCAAATATTGGTGTGGAGAAGTTCCTGGAGTTGAATTCTGAGCAGAATCATGATGACTACTGCCTGGCCTATGTCTTCACAGACCGGGATTTTGATGATGGTGTTCTTGGTCTGGCCTGGGTTGGAGCACCTTCAGGTCAGTATGGAAATCCTTTAAATAAATATATTAGACATTATGAAGGATTATCTTACAATGTGGATTCATTACACCAAAAACACCAGCGTGCCAAACGAGCAGTCTCACATGAGGACCAGTTTTTACTTCTAGATTTCCATGCTCATGGAAGACAGTTCAACCTACGAATGAAGAGGGACACTTCCCTTTTTAGTGATGAATTTAAAGTAGAAACATCAAATAAAGTACTTGATTATGATACCTCTCATATTTACACTGGACATATTTATGGTGAAGAAGGAAGCTTTAGTCATGGGTCTGTCATTGATGGAAGATTTGAAGGTTTCATCAAGACTCGTGGTGGCACGTTTTACATTGAGCCAGCAGAGAGATACATTAAAGATCGAATCCTGCCATTTCACTCTGTCATTTATCATGAAGATGATATTAACTATCCCCATAAATACGGCCCACAGGGGGGCTGTGCAGATCACTCCGTTTTTGAAAGGATGAGGAAGTACCAAATGACTGGAGTAGAGGAAGGAGCCCGGGCACATCCAGAGAAGCATGCTGCTAGTAGTGGTCCTGAGCTCCTGAGGAAAAAACGCACAACTCTGGCTGAAAGAAATACTTGTCAGCTCTATATCCAGACAGATCACCTGTTCTTTAAATACTATGGAACACGAGAAGCTGTGATTGCTCAGATATCCAGTCATGTTAAAGCAATTGATACAATTTACCAGACTACAGACTTCTCCGGAATCCGTAACATCAGCTTCATGGTGAAACGCATAAGAATCAATACAACCTCTGATGAAAAAGACCCTACAAATCCTTTCCGTTTCCCAAATATTGGTGTGGAGAAGTTCCTGGAGTTGAATTCTGAGCAGAATCATGATGACTACTGCCTGGCCTATGTCTTCACAGACCGGGATTTTGATGATGGTGTTCTTGGTCTGGCCTGGGTTGGAGCACCTTCA
Peptide sequence:
MKRDTSLFSDEFKVETSNKVLDYDTSHIYTGHIYGEEGSFSHGSVIDGRFEGFIKTRGGTFYIEPAERYIKDRILPFHSVIYHEDDINYPHKYGPQGGCADHSVFERMRKYQMTGVEEGARAHPEKHAASSGPELLRKKRTTLAERNTCQLYIQTDHLFFKYYGTREAVIAQISSHVKAIDTIYQTTDFSGIRNISFMVKRIRINTTSDEKDPTNPFRFPNIGVEKFLELNSEQNHDDYCLAYVFTDRDFDDGVLGLAWVGAPSGQYGNPLNKYIRHYEGLSYNVDSLHQKHQRAKRAVSHEDQFLLLDFHAHGRQFNLRMKRDTSLFSDEFKVETSNKVLDYDTSHIYTGHIYGEEGSFSHGSVIDGRFEGFIKTRGGTFYIEPAERYIKDRILPFHSVIYHEDDINYPHKYGPQGGCADHSVFERMRKYQMTGVEEGARAHPEKHAASSGPELLRKKRTTLAERNTCQLYIQTDHLFFKYYGTREAVIAQISSHVKAIDTIYQTTDFSGIRNISFMVKRIRINTTSDEKDPTNPFRFPNIGVEKFLELNSEQNHDDYCLAYVFTDRDFDDGVLGLAWVGAPS
IRESfinder result
IRESfinder score
0.722922662
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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