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mmu_circActr3_814

Basic information of circular RNA
PanCircBase ID:

mmu_circActr3_814

mm39_Chr. Position ID:

chr1|125331129|125346041|-

Gene name:

Actr3

Transcript:

ENSMUST00000027579.17

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

7

Exon/intron indexes:

9,8,7,6,5,4,3

Exon/intron offsets:

0,2452,3899,5127,7871,12863,14856

Genomic length:

14912

Exon/intron sizes in nt:

174,144,108,96,111,125,56

Flanking exon/introns:

chr1:125325281-125331129|chr1:125346041-125363021

Splice length:

814

Other database IDs:

CIRCpedia: MMU_CIRCpedia_6494, circAtlas: mmu-Actr3_0001

circAtlas: hsa-ACTR3_0001, CIRCpedia: HSA_CIRCpedia_37604

Human Ortholog IDs:
Mature spliced Sequence:

ATATACAAAACTAGGATATGCTGGAAATACAGAGCCACAGTTTATCATCCCATCATGTATTGCCATTAAAGAGTCTGCAAAAGTGGGTGACCAAGCCCAGAGGAGGGTGATGAAAGGCGTGGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAGCCCACATATGCAACAAAGTGGCCAATTCGCCATGGTATAGTTGAAGACTGGGACTTAATGGAAAGGTTTATGGAGCAAGTGATTTTTAAATATTTAAGGGCAGAACCTGAAGATCATTACTTTCTTTTGACTGAACCTCCACTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAATCCTTCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCCTGGACCTCAAGACAAGTAGGAGAGCGGACGCTGACGGGTACAGTAATAGACAGTGGAGACGGAGTCACTCATGTCATTCCTGTGGCTGAAGGATATGTTATCGGCAGCTGTATTAAACACATTCCAATCGCAGGAAGAGATATAACATATTTTATTCAGCAACTGCTGCGAGACCGAGAAGTAGGAATCCCTCCTGAGCAGTCCTTGGAAACTGCGAAAGCAGTGAAGGAACGCTACAGTTATGTCTGCCCAGATTTAGTAAAAGAGTTTAACAAGTATGACACCGATGGGTCAAAGTGGATCAAACAGTACACCGGAGTCAACGCCATCTCAAAGAAAGAGTTTTCTATTGATGTTGGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GGCTATGAGCGATTCCTGGG

60.32

GCTTGGTCACCCACTTTTGC

60.25

141

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TGGCTATGAGCGATTCCTGG

59.61

GCTTGGTCACCCACTTTTGC

60.25

142

PCR template sequence:

CAAACAGTACACCGGAGTCAACGCCATCTCAAAGAAAGAGTTTTCTATTGATGTTGGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAGATATACAAAACTAGGATATGCTGGAAATACAGAGCCACAGTTTATCATCCCATCATGTATTGCCATTAAAGAGTCTGCAAAAGTGGGTGACCAAGCCCAG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

6

Interacting miRNAs (#binding sites)

mmu-miR-31-5p(1), mmu-miR-132-3p(1), mmu-miR-326-3p(1), mmu-miR-541-5p(1), mmu-miR-544-5p(1), mmu-miR-338-3p(1)

siRNAs for circular RNA silencing
Junction sequence

TTTCCATCCAGAGATATACAAAACTA

siRNA sets

TAGTTTTGTATATCTCTGG,TTTGTATATCTCTGGATGG,AGTTTTGTATATCTCTGGA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCACTR3_814_ORF_1

0.8939

0.119354821

0.974550719

939

ORF sequence:

ATGACACCGATGGGTCAAAGTGGATCAAACAGTACACCGGAGTCAACGCCATCTCAAAGAAAGAGTTTTCTATTGATGTTGGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAGATATACAAAACTAGGATATGCTGGAAATACAGAGCCACAGTTTATCATCCCATCATGTATTGCCATTAAAGAGTCTGCAAAAGTGGGTGACCAAGCCCAGAGGAGGGTGATGAAAGGCGTGGATGACCTAGACTTCTTCATTGGTGATGAAGCAATAGAAAAGCCCACATATGCAACAAAGTGGCCAATTCGCCATGGTATAGTTGAAGACTGGGACTTAATGGAAAGGTTTATGGAGCAAGTGATTTTTAAATATTTAAGGGCAGAACCTGAAGATCATTACTTTCTTTTGACTGAACCTCCACTGAATACTCCAGAAAACAGGGAATATACTGCTGAAATAATGTTTGAATCCTTCAATGTTCCAGGCTTGTACATTGCTGTGCAGGCTGTTCTTGCCTTAGCTGCATCCTGGACCTCAAGACAAGTAGGAGAGCGGACGCTGACGGGTACAGTAATAGACAGTGGAGACGGAGTCACTCATGTCATTCCTGTGGCTGAAGGATATGTTATCGGCAGCTGTATTAAACACATTCCAATCGCAGGAAGAGATATAACATATTTTATTCAGCAACTGCTGCGAGACCGAGAAGTAGGAATCCCTCCTGAGCAGTCCTTGGAAACTGCGAAAGCAGTGAAGGAACGCTACAGTTATGTCTGCCCAGATTTAGTAAAAGAGTTTAACAAGTATGACACCGATGGGTCAAAGTGGATCAAACAGTACACCGGAGTCAACGCCATCTCAAAGAAAGAGTTTTCTATTGATGTTGGCTATGAGCGATTCCTGGGACCCGAGATCTTTTTCCATCCAGAG

Peptide sequence:

MTPMGQSGSNSTPESTPSQRKSFLLMLAMSDSWDPRSFSIQRYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGVNAISKKEFSIDVGYERFLGPEIFFHPE

IRESfinder result

IRESfinder score

0.540074624

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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