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mmu_circAcad11_122
Basic information of circular RNA
PanCircBase ID:
mmu_circAcad11_122
mm39_Chr. Position ID:
chr9|103958896|103959018|+
Gene name:
Acad11
Transcript:
ENSMUST00000120854.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
122
Exon/intron sizes in nt:
122
Flanking exon/introns:
chr9:103958571-103958896|chr9:103959018-103959989
Splice length:
122
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAATACCGTTGATGGAAGAACTGATTTCAATATACTGCCACCGAAGGGGAATTGATCCTAATCTCCCTAACTGGAATTTCTTTATGGCCCTCTCATTTTTTAAATTGGCTGGAATATCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTCCCTAACTGGAATTTCTTTATGGC
59.96
TAGGATCAATTCCCCTTCGGTG
59.56
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCCCTAACTGGAATTTCTTTATGG
58.65
AGGATCAATTCCCCTTCGGTG
59.79
120
PCR template sequence:
TCTCCCTAACTGGAATTTCTTTATGGCCCTCTCATTTTTTAAATTGGCTGGAATATCACAGGAATACCGTTGATGGAAGAACTGATTTCAATATACTGCCACCGAAGGGGAATTGATCCTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TGGAATATCACAGGAATACCGTTGAT
siRNA sets
ATCAACGGTATTCCTGTGA,GTATTCCTGTGATATTCCA,GGTATTCCTGTGATATTCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACAD11_122_ORF_1
0.362
-0.171551992
0.012255279
123
ORF sequence:
ATGGAAGAACTGATTTCAATATACTGCCACCGAAGGGGAATTGATCCTAATCTCCCTAACTGGAATTTCTTTATGGCCCTCTCATTTTTTAAATTGGCTGGAATATCACAGGAATACCGTTGA
Peptide sequence:
MEELISIYCHRRGIDPNLPNWNFFMALSFFKLAGISQEYR
IRESfinder result
IRESfinder score
0.918853629
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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