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mmu_circAcaca_3370
Basic information of circular RNA
PanCircBase ID:
mmu_circAcaca_3370
mm39_Chr. Position ID:
chr11|84150148|84237641|+
Gene name:
Acaca
Transcript:
ENSMUST00000103201.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
27
Exon/intron indexes:
19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45
Exon/intron offsets:
0,1301,2187,3073,3949,4716,10994,17211,18473,19543,21069,30965,33568,34574,35615,40745,41098,47794,51944,53404,56451,61203,63160,78991,82604,86643,87382
Genomic length:
87493
Exon/intron sizes in nt:
15,11,35,14,71,89,10,10,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:84148147-84150148|chr11:84237641-84254489
Splice length:
3370
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGATCAGTTATGTGGCCGGGACCCTACACTTACTGATGAGCTGCTAAATATCCTCACAGAGCTAACCCAACTCAGCAAGACCACCAACGCTAAAGTGGCGCTGCGCGCTCGTCAGGTTCTTATTGCTTCCCATTTGCCATCATATGAGCTTCGCCATAACCAAGTAGAGTCTATCTTCCTATCAGCCATTGACATGTATGGACACCAGTTTTGCATTGAGAACCTGCAGAAACTCATCCTCTCGGAAACATCTATTTTCGATGTCCTCCCAAACTTTTTTTACCACAGCAACCAGGTGGTGAGGATGGCAGCTCTGGAGGTGTATGTTCGAAGGGCTTACATTGCCTATGAACTCAACAGCGTACAACACCGCCAGCTTAAGGACAACACCTGTGTGGTGGAATTTCAGTTCATGCTGCCCACATCCCATCCAAACAGAGGGAACATCCCCACGCTAAACAGAATGTCCTTTGCCTCCAACCTCAACCACTATGGCATGACTCATGTAGCTAGTGTCAGCGATGTTCTGTTGGACAACGCCTTCACGCCACCTTGTCAGCGGATGGGCGGAATGGTCTCTTTCCGGACCTTTGAAGATTTTGTCAGGATCTTTGATGAAATAATGGGCTGCTTCTGTGACTCCCCACCCCAAAGCCCCACATTCCCAGAGTCTGGTCATACTTCGCTCTATGATGAAGACAAGGTCCCCAGGGATGAACCAATACATATTCTGAATGTGGCTATCAAGACTGATGGCGATATTGAGGATGACAGGCTTGCAGCTATGTTCAGAGAGTTCACCCAGCAGAATAAAGCTACTTTGGTTGAGCATGGCATCCGGCGACTTACGTTCCTAGTTGCACAAAAGGATTTCAGAAAACAAGTCAACTGTGAGGTGGATCAGAGATTTCATAGAGAATTCCCCAAATTTTTCACATTCCGAGCAAGGGATAAGTTTGAGGAGGACCGCATTTATCGACACCTGGAGCCTGCTCTGGCTTTCCAGTTAGAGTTGAACCGGATGAGAAATTTTGACCTTACTGCCATCCCATGTGCTAATCACAAGATGCACCTGTACCTTGGGGCTGCTAAGGTGGAAGTAGGCACAGAAGTGACTGACTACAGGTTCTTTGTTCGTGCGATCATCAGGCACTCTGATCTGGTCACAAAGGAAGCTTCTTTCGAATATCTACAAAATGAAGGGGAACGACTGCTCCTGGAAGCTATGGATGAATTGGAAGTTGCTTTTAATAATACAAATGTCCGCACTGACTGTAACCACATCTTCCTCAACTTTGTGCCCACGGTCATCATGGACCCATCAAAGATTGAAGAATCTGTGCGGAGCATGGTAATGCGCTATGGAAGTCGGCTATGGAAATTGCGGGTCCTCCAGGCAGAACTGAAAATCAACATTCGCCTGACAACAACTGGAAAAGCAATTCCCATCCGCCTCTTCCTGACAAACGAGTCTGGCTACTACTTGGACATCAGCCTGTATAAGGAAGTGACTGACTCCAGGACAGCACAGATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGGGCTTACCTTGTCCG
60.03
ACGGTGAGCGCATTACAGAT
59.82
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGGGCTTACCTTGTCCG
60.03
TAACTTCCCAGCAGACGGTG
59.68
178
PCR template sequence:
GGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAAATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(2), mmu-miR-27a-3p(2), mmu-miR-205-5p(2), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-miR-221-3p(1), mmu-miR-18a-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-23a-3p(1), mmu-miR-128-3p(1), mmu-miR-433-5p(1), mmu-miR-494-3p(1), mmu-miR-127-5p(1), mmu-miR-182-5p(1), mmu-miR-370-3p(1), mmu-miR-758-3p(1), mmu-miR-383-5p(1), mmu-miR-705(1), mmu-miR-190b-5p(1), mmu-miR-335-3p(1), mmu-miR-490-3p(1), mmu-miR-193b-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCCCTCAACAAAATATCGAATCACA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACACA_3370_ORF_1
1.1759
0.278781853
1
3333
ORF sequence:
ATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGATCAGTTATGTGGCCGGGACCCTACACTTACTGATGAGCTGCTAAATATCCTCACAGAGCTAACCCAACTCAGCAAGACCACCAACGCTAAAGTGGCGCTGCGCGCTCGTCAGGTTCTTATTGCTTCCCATTTGCCATCATATGAGCTTCGCCATAACCAAGTAGAGTCTATCTTCCTATCAGCCATTGACATGTATGGACACCAGTTTTGCATTGAGAACCTGCAGAAACTCATCCTCTCGGAAACATCTATTTTCGATGTCCTCCCAAACTTTTTTTACCACAGCAACCAGGTGGTGAGGATGGCAGCTCTGGAGGTGTATGTTCGAAGGGCTTACATTGCCTATGAACTCAACAGCGTACAACACCGCCAGCTTAAGGACAACACCTGTGTGGTGGAATTTCAGTTCATGCTGCCCACATCCCATCCAAACAGAGGGAACATCCCCACGCTAAACAGAATGTCCTTTGCCTCCAACCTCAACCACTATGGCATGACTCATGTAGCTAGTGTCAGCGATGTTCTGTTGGACAACGCCTTCACGCCACCTTGTCAGCGGATGGGCGGAATGGTCTCTTTCCGGACCTTTGAAGATTTTGTCAGGATCTTTGATGAAATAATGGGCTGCTTCTGTGACTCCCCACCCCAAAGCCCCACATTCCCAGAGTCTGGTCATACTTCGCTCTATGATGAAGACAAGGTCCCCAGGGATGAACCAATACATATTCTGAATGTGGCTATCAAGACTGATGGCGATATTGAGGATGACAGGCTTGCAGCTATGTTCAGAGAGTTCACCCAGCAGAATAAAGCTACTTTGGTTGAGCATGGCATCCGGCGACTTACGTTCCTAGTTGCACAAAAGGATTTCAGAAAACAAGTCAACTGTGAGGTGGATCAGAGATTTCATAGAGAATTCCCCAAATTTTTCACATTCCGAGCAAGGGATAAGTTTGAGGAGGACCGCATTTATCGACACCTGGAGCCTGCTCTGGCTTTCCAGTTAGAGTTGAACCGGATGAGAAATTTTGACCTTACTGCCATCCCATGTGCTAATCACAAGATGCACCTGTACCTTGGGGCTGCTAAGGTGGAAGTAGGCACAGAAGTGACTGACTACAGGTTCTTTGTTCGTGCGATCATCAGGCACTCTGATCTGGTCACAAAGGAAGCTTCTTTCGAATATCTACAAAATGAAGGGGAACGACTGCTCCTGGAAGCTATGGATGAATTGGAAGTTGCTTTTAATAATACAAATGTCCGCACTGACTGTAACCACATCTTCCTCAACTTTGTGCCCACGGTCATCATGGACCCATCAAAGATTGAAGAATCTGTGCGGAGCATGGTAATGCGCTATGGAAGTCGGCTATGGAAATTGCGGGTCCTCCAGGCAGAACTGAAAATCAACATTCGCCTGACAACAACTGGAAAAGCAATTCCCATCCGCCTCTTCCTGACAAACGAGTCTGGCTACTACTTGGACATCAGCCTGTATAAGGAAGTGACTGACTCCAGGACAGCACAGATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAAATATCGAATCACAATTGGCAATAA
Peptide sequence:
MRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAKVALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGHQFCIENLQKLILSETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPNRGNIPTLNRMSFASNLNHYGMTHVASVSDVLLDNAFTPPCQRMGGMVSFRTFEDFVRIFDEIMGCFCDSPPQSPTFPESGHTSLYDEDKVPRDEPIHILNVAIKTDGDIEDDRLAAMFREFTQQNKATLVEHGIRRLTFLVAQKDFRKQVNCEVDQRFHREFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFDLTAIPCANHKMHLYLGAAKVEVGTEVTDYRFFVRAIIRHSDLVTKEASFEYLQNEGERLLLEAMDELEVAFNNTNVRTDCNHIFLNFVPTVIMDPSKIEESVRSMVMRYGSRLWKLRVLQAELKINIRLTTTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQIMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWESMSTQAFLPSPPLPSDILTYTELVLDDQGQLVHMNRLPGGNEIGMVAWKMSLKSPEYPDGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEIRHMFHVAWVDPEDPYKGYKYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGLGAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKISNHNWQ
IRESfinder result
IRESfinder score
0.519391702
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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