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mmu_circAcaca_3370

Basic information of circular RNA
PanCircBase ID:

mmu_circAcaca_3370

mm39_Chr. Position ID:

chr11|84150148|84237641|+

Gene name:

Acaca

Transcript:

ENSMUST00000103201.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

27

Exon/intron indexes:

19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45

Exon/intron offsets:

0,1301,2187,3073,3949,4716,10994,17211,18473,19543,21069,30965,33568,34574,35615,40745,41098,47794,51944,53404,56451,61203,63160,78991,82604,86643,87382

Genomic length:

87493

Exon/intron sizes in nt:

15,11,35,14,71,89,10,10,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000

Flanking exon/introns:

chr11:84148147-84150148|chr11:84237641-84254489

Splice length:

3370

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

ATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGATCAGTTATGTGGCCGGGACCCTACACTTACTGATGAGCTGCTAAATATCCTCACAGAGCTAACCCAACTCAGCAAGACCACCAACGCTAAAGTGGCGCTGCGCGCTCGTCAGGTTCTTATTGCTTCCCATTTGCCATCATATGAGCTTCGCCATAACCAAGTAGAGTCTATCTTCCTATCAGCCATTGACATGTATGGACACCAGTTTTGCATTGAGAACCTGCAGAAACTCATCCTCTCGGAAACATCTATTTTCGATGTCCTCCCAAACTTTTTTTACCACAGCAACCAGGTGGTGAGGATGGCAGCTCTGGAGGTGTATGTTCGAAGGGCTTACATTGCCTATGAACTCAACAGCGTACAACACCGCCAGCTTAAGGACAACACCTGTGTGGTGGAATTTCAGTTCATGCTGCCCACATCCCATCCAAACAGAGGGAACATCCCCACGCTAAACAGAATGTCCTTTGCCTCCAACCTCAACCACTATGGCATGACTCATGTAGCTAGTGTCAGCGATGTTCTGTTGGACAACGCCTTCACGCCACCTTGTCAGCGGATGGGCGGAATGGTCTCTTTCCGGACCTTTGAAGATTTTGTCAGGATCTTTGATGAAATAATGGGCTGCTTCTGTGACTCCCCACCCCAAAGCCCCACATTCCCAGAGTCTGGTCATACTTCGCTCTATGATGAAGACAAGGTCCCCAGGGATGAACCAATACATATTCTGAATGTGGCTATCAAGACTGATGGCGATATTGAGGATGACAGGCTTGCAGCTATGTTCAGAGAGTTCACCCAGCAGAATAAAGCTACTTTGGTTGAGCATGGCATCCGGCGACTTACGTTCCTAGTTGCACAAAAGGATTTCAGAAAACAAGTCAACTGTGAGGTGGATCAGAGATTTCATAGAGAATTCCCCAAATTTTTCACATTCCGAGCAAGGGATAAGTTTGAGGAGGACCGCATTTATCGACACCTGGAGCCTGCTCTGGCTTTCCAGTTAGAGTTGAACCGGATGAGAAATTTTGACCTTACTGCCATCCCATGTGCTAATCACAAGATGCACCTGTACCTTGGGGCTGCTAAGGTGGAAGTAGGCACAGAAGTGACTGACTACAGGTTCTTTGTTCGTGCGATCATCAGGCACTCTGATCTGGTCACAAAGGAAGCTTCTTTCGAATATCTACAAAATGAAGGGGAACGACTGCTCCTGGAAGCTATGGATGAATTGGAAGTTGCTTTTAATAATACAAATGTCCGCACTGACTGTAACCACATCTTCCTCAACTTTGTGCCCACGGTCATCATGGACCCATCAAAGATTGAAGAATCTGTGCGGAGCATGGTAATGCGCTATGGAAGTCGGCTATGGAAATTGCGGGTCCTCCAGGCAGAACTGAAAATCAACATTCGCCTGACAACAACTGGAAAAGCAATTCCCATCCGCCTCTTCCTGACAAACGAGTCTGGCTACTACTTGGACATCAGCCTGTATAAGGAAGTGACTGACTCCAGGACAGCACAGATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

ATTGGGGCTTACCTTGTCCG

60.03

ACGGTGAGCGCATTACAGAT

59.82

164

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

ATTGGGGCTTACCTTGTCCG

60.03

TAACTTCCCAGCAGACGGTG

59.68

178

PCR template sequence:

GGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAAATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATT

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

26

Interacting miRNAs (#binding sites)

mmu-miR-27b-3p(2), mmu-miR-27a-3p(2), mmu-miR-205-5p(2), mmu-miR-9-5p(1), mmu-miR-23b-3p(1), mmu-miR-1a-3p(1), mmu-miR-206-3p(1), mmu-miR-221-3p(1), mmu-miR-18a-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-23a-3p(1), mmu-miR-128-3p(1), mmu-miR-433-5p(1), mmu-miR-494-3p(1), mmu-miR-127-5p(1), mmu-miR-182-5p(1), mmu-miR-370-3p(1), mmu-miR-758-3p(1), mmu-miR-383-5p(1), mmu-miR-705(1), mmu-miR-190b-5p(1), mmu-miR-335-3p(1), mmu-miR-490-3p(1), mmu-miR-193b-3p(1), mmu-miR-181d-5p(1)

siRNAs for circular RNA silencing
Junction sequence

TGCCCTCAACAAAATATCGAATCACA

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCACACA_3370_ORF_1

1.1759

0.278781853

1

3333

ORF sequence:

ATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGATCAGTTATGTGGCCGGGACCCTACACTTACTGATGAGCTGCTAAATATCCTCACAGAGCTAACCCAACTCAGCAAGACCACCAACGCTAAAGTGGCGCTGCGCGCTCGTCAGGTTCTTATTGCTTCCCATTTGCCATCATATGAGCTTCGCCATAACCAAGTAGAGTCTATCTTCCTATCAGCCATTGACATGTATGGACACCAGTTTTGCATTGAGAACCTGCAGAAACTCATCCTCTCGGAAACATCTATTTTCGATGTCCTCCCAAACTTTTTTTACCACAGCAACCAGGTGGTGAGGATGGCAGCTCTGGAGGTGTATGTTCGAAGGGCTTACATTGCCTATGAACTCAACAGCGTACAACACCGCCAGCTTAAGGACAACACCTGTGTGGTGGAATTTCAGTTCATGCTGCCCACATCCCATCCAAACAGAGGGAACATCCCCACGCTAAACAGAATGTCCTTTGCCTCCAACCTCAACCACTATGGCATGACTCATGTAGCTAGTGTCAGCGATGTTCTGTTGGACAACGCCTTCACGCCACCTTGTCAGCGGATGGGCGGAATGGTCTCTTTCCGGACCTTTGAAGATTTTGTCAGGATCTTTGATGAAATAATGGGCTGCTTCTGTGACTCCCCACCCCAAAGCCCCACATTCCCAGAGTCTGGTCATACTTCGCTCTATGATGAAGACAAGGTCCCCAGGGATGAACCAATACATATTCTGAATGTGGCTATCAAGACTGATGGCGATATTGAGGATGACAGGCTTGCAGCTATGTTCAGAGAGTTCACCCAGCAGAATAAAGCTACTTTGGTTGAGCATGGCATCCGGCGACTTACGTTCCTAGTTGCACAAAAGGATTTCAGAAAACAAGTCAACTGTGAGGTGGATCAGAGATTTCATAGAGAATTCCCCAAATTTTTCACATTCCGAGCAAGGGATAAGTTTGAGGAGGACCGCATTTATCGACACCTGGAGCCTGCTCTGGCTTTCCAGTTAGAGTTGAACCGGATGAGAAATTTTGACCTTACTGCCATCCCATGTGCTAATCACAAGATGCACCTGTACCTTGGGGCTGCTAAGGTGGAAGTAGGCACAGAAGTGACTGACTACAGGTTCTTTGTTCGTGCGATCATCAGGCACTCTGATCTGGTCACAAAGGAAGCTTCTTTCGAATATCTACAAAATGAAGGGGAACGACTGCTCCTGGAAGCTATGGATGAATTGGAAGTTGCTTTTAATAATACAAATGTCCGCACTGACTGTAACCACATCTTCCTCAACTTTGTGCCCACGGTCATCATGGACCCATCAAAGATTGAAGAATCTGTGCGGAGCATGGTAATGCGCTATGGAAGTCGGCTATGGAAATTGCGGGTCCTCCAGGCAGAACTGAAAATCAACATTCGCCTGACAACAACTGGAAAAGCAATTCCCATCCGCCTCTTCCTGACAAACGAGTCTGGCTACTACTTGGACATCAGCCTGTATAAGGAAGTGACTGACTCCAGGACAGCACAGATCATGTTTCAGGCATATGGAGACAAGCAGGGACCACTGCATGGAATGTTAATTAATACTCCATATGTGACCAAAGACCTTCTTCAATCAAAGAGGTTCCAGGCACAGTCCTTAGGAACAACATATATATATGATATCCCAGAGATGTTTCGGCAGTCACTCATCAAACTCTGGGAGTCCATGTCCACCCAAGCATTTCTTCCTTCGCCTCCTTTGCCTTCCGACATCCTGACGTATACTGAACTGGTGTTGGATGATCAAGGCCAGCTGGTCCATATGAACAGACTTCCAGGAGGAAATGAGATTGGCATGGTAGCCTGGAAAATGAGCCTTAAAAGCCCTGAATATCCAGATGGCCGAGATATCATTGTCATCGGCAATGACATTACATATCGGATCGGTTCCTTTGGGCCTCAGGAGGATTTGCTGTTTCTCAGAGCTTCTGAACTTGCCAGAGCAGAAGGCATCCCACGCATCTACGTGGCAGCGAACAGTGGAGCTAGAATTGGACTTGCAGAAGAAATACGCCATATGTTCCATGTGGCCTGGGTAGATCCTGAAGATCCCTACAAGGGATACAAGTATTTATATCTGACACCCCAGGATTATAAGAGAGTCAGTGCCCTCAATTCTGTCCACTGTGAACATGTGGAGGATGAAGGGGAATCCAGGTACAAGATAACAGATATTATCGGGAAAGAAGAAGGACTTGGAGCAGAGAACCTTCGGGGTTCTGGAATGATTGCTGGGGAATCCTCATTGGCTTACGATGAGGTCATCACCATCAGCCTGGTTACATGCCGGGCCATTGGTATTGGGGCTTACCTTGTCCGGCTGGGACAAAGAACCATCCAGGTTGAGAATTCTCACTTAATTCTGACAGGAGCAGGTGCCCTCAACAAAATATCGAATCACAATTGGCAATAA

Peptide sequence:

MRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIDQLCGRDPTLTDELLNILTELTQLSKTTNAKVALRARQVLIASHLPSYELRHNQVESIFLSAIDMYGHQFCIENLQKLILSETSIFDVLPNFFYHSNQVVRMAALEVYVRRAYIAYELNSVQHRQLKDNTCVVEFQFMLPTSHPNRGNIPTLNRMSFASNLNHYGMTHVASVSDVLLDNAFTPPCQRMGGMVSFRTFEDFVRIFDEIMGCFCDSPPQSPTFPESGHTSLYDEDKVPRDEPIHILNVAIKTDGDIEDDRLAAMFREFTQQNKATLVEHGIRRLTFLVAQKDFRKQVNCEVDQRFHREFPKFFTFRARDKFEEDRIYRHLEPALAFQLELNRMRNFDLTAIPCANHKMHLYLGAAKVEVGTEVTDYRFFVRAIIRHSDLVTKEASFEYLQNEGERLLLEAMDELEVAFNNTNVRTDCNHIFLNFVPTVIMDPSKIEESVRSMVMRYGSRLWKLRVLQAELKINIRLTTTGKAIPIRLFLTNESGYYLDISLYKEVTDSRTAQIMFQAYGDKQGPLHGMLINTPYVTKDLLQSKRFQAQSLGTTYIYDIPEMFRQSLIKLWESMSTQAFLPSPPLPSDILTYTELVLDDQGQLVHMNRLPGGNEIGMVAWKMSLKSPEYPDGRDIIVIGNDITYRIGSFGPQEDLLFLRASELARAEGIPRIYVAANSGARIGLAEEIRHMFHVAWVDPEDPYKGYKYLYLTPQDYKRVSALNSVHCEHVEDEGESRYKITDIIGKEEGLGAENLRGSGMIAGESSLAYDEVITISLVTCRAIGIGAYLVRLGQRTIQVENSHLILTGAGALNKISNHNWQ

IRESfinder result

IRESfinder score

0.519391702

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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