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Database for pancreatic islet circular RNAs
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mmu_circAcaca_2127
Basic information of circular RNA
PanCircBase ID:
mmu_circAcaca_2127
mm39_Chr. Position ID:
chr11|84129651|84161267|+
Gene name:
Acaca
Transcript:
ENSMUST00000103201.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
11,12,13,14,15,16,17,18,19,20,21,22,23,24,25
Exon/intron offsets:
0,4452,6381,6868,10588,12406,17858,18350,20497,21798,22684,23570,24446,25213,31491
Genomic length:
31616
Exon/intron sizes in nt:
210,171,162,164,151,104,82,146,151,135,147,189,101,89,125
Flanking exon/introns:
chr11:84122587-84129651|chr11:84161267-84167359
Splice length:
2127
Other database IDs:
CIRCpedia: MMU_CIRCpedia_36484
Human Ortholog IDs:
Mature spliced Sequence:
GTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCGACATGAACACCGTACT
59.4
TGGACCTCCAGATGTCGAGA
59.67
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCGACATGAACACCGTACTG