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mmu_circAcaca_2127
Basic information of circular RNA
PanCircBase ID:
mmu_circAcaca_2127
mm39_Chr. Position ID:
chr11|84129651|84161267|+
Gene name:
Acaca
Transcript:
ENSMUST00000103201.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
11,12,13,14,15,16,17,18,19,20,21,22,23,24,25
Exon/intron offsets:
0,4452,6381,6868,10588,12406,17858,18350,20497,21798,22684,23570,24446,25213,31491
Genomic length:
31616
Exon/intron sizes in nt:
210,171,162,164,151,104,82,146,151,135,147,189,101,89,125
Flanking exon/introns:
chr11:84122587-84129651|chr11:84161267-84167359
Splice length:
2127
Other database IDs:
CIRCpedia: MMU_CIRCpedia_36484
Human Ortholog IDs:
Mature spliced Sequence:
GTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCGACATGAACACCGTACT
59.4
TGGACCTCCAGATGTCGAGA
59.67
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCGACATGAACACCGTACTG
59.29
TGGACCTCCAGATGTCGAGA
59.67
154
PCR template sequence:
CCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
28
Interacting miRNAs (#binding sites)
mmu-miR-15b-5p(2), mmu-miR-182-5p(2), mmu-miR-137-3p(1), mmu-miR-23b-3p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-150-5p(1), mmu-miR-34a-5p(1), mmu-miR-200c-3p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-23a-3p(1), mmu-miR-433-5p(1), mmu-miR-127-5p(1), mmu-miR-370-3p(1), mmu-miR-541-5p(1), mmu-miR-362-5p(1), mmu-miR-297a-5p(1), mmu-miR-705(1), mmu-miR-27a-5p(1), mmu-miR-342-3p(1), mmu-miR-1187(1), mmu-miR-484(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACAATGCTTATTGTTCAAGCTGAAG
siRNA sets
CTTCAGCTTGAACAATAAG, TTGAACAATAAGCATTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCACACA_2127_ORF_1
1.2193
0.268032921
1
4218
ORF sequence:
ATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATT
Peptide sequence:
MRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWGDAPIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWGDAPIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLI
IRESfinder result
IRESfinder score
0.534196953
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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