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mmu_circAcaca_2127

Basic information of circular RNA
PanCircBase ID:

mmu_circAcaca_2127

mm39_Chr. Position ID:

chr11|84129651|84161267|+

Gene name:

Acaca

Transcript:

ENSMUST00000103201.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

15

Exon/intron indexes:

11,12,13,14,15,16,17,18,19,20,21,22,23,24,25

Exon/intron offsets:

0,4452,6381,6868,10588,12406,17858,18350,20497,21798,22684,23570,24446,25213,31491

Genomic length:

31616

Exon/intron sizes in nt:

210,171,162,164,151,104,82,146,151,135,147,189,101,89,125

Flanking exon/introns:

chr11:84122587-84129651|chr11:84161267-84167359

Splice length:

2127

Other database IDs:

CIRCpedia: MMU_CIRCpedia_36484

Human Ortholog IDs:
Mature spliced Sequence:

GTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATT

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

AGCGACATGAACACCGTACT

59.4

TGGACCTCCAGATGTCGAGA

59.67

155

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCGACATGAACACCGTACTG

59.29

TGGACCTCCAGATGTCGAGA

59.67

154

PCR template sequence:

CCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

28

Interacting miRNAs (#binding sites)

mmu-miR-15b-5p(2), mmu-miR-182-5p(2), mmu-miR-137-3p(1), mmu-miR-23b-3p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-150-5p(1), mmu-miR-34a-5p(1), mmu-miR-200c-3p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-23a-3p(1), mmu-miR-433-5p(1), mmu-miR-127-5p(1), mmu-miR-370-3p(1), mmu-miR-541-5p(1), mmu-miR-362-5p(1), mmu-miR-297a-5p(1), mmu-miR-705(1), mmu-miR-27a-5p(1), mmu-miR-342-3p(1), mmu-miR-1187(1), mmu-miR-484(1), mmu-miR-193b-3p(1)

siRNAs for circular RNA silencing
Junction sequence

GACAATGCTTATTGTTCAAGCTGAAG

siRNA sets

CTTCAGCTTGAACAATAAG, TTGAACAATAAGCATTGTC

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCACACA_2127_ORF_1

1.2193

0.268032921

1

4218

ORF sequence:

ATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATTGTTCAAGCTGAAGTTCCTGGATCACCTATATTTGTAATGAGACTAGCAAAACAATCTCGACATCTGGAGGTCCAGATTCTGGCAGATCAGTATGGCAATGCTATTTCTTTGTTTGGTCGTGACTGCTCTGTGCAGCGCAGGCATCAGAAGATCATTGAAGAAGCTCCTGCTGCGATTGCTACCCCAGCAGTATTTGAACACATGGAACAGTGTGCAGTGAAACTTGCCAAAATGGTTGGTTATGTGAGTGCTGGGACTGTGGAATACTTGTACAGCCAGGATGGAAGCTTCTACTTTTTGGAACTGAACCCTCGGCTACAGGTTGAACATCCTTGTACAGAGATGGTGGCTGATGTCAATCTTCCTGCAGCACAGCTCCAGATTGCCATGGGGATCCCTCTATTTAGGATCAAGGATATTCGTATGATGTATGGGGTATCTCCTTGGGGAGATGCTCCCATTGATTTTGAAAATTCTGCTCATGTTCCTTGCCCAAGGGGCCACGTGATTGCTGCTCGGATCACCAGTGAAAACCCAGATGAGGGGTTTAAGCCCAGCTCTGGAACAGTTCAGGAACTTAATTTTCGTAGCAATAAGAACGTTTGGGGTTATTTCAGTGTTGCTGCTGCTGGAGGACTTCATGAATTTGCTGATTCTCAGTTCGGGCACTGCTTTTCCTGGGGAGAAAACAGGGAGGAAGCAATCTCAAATATGGTGGTGGCACTGAAGGAGCTGTCTATTCGGGGTGACTTTCGAACTACAGTGGAATACCTCATCAAACTGCTGGAGACAGAAAGCTTTCAGCTTAACAGAATCGACACTGGCTGGCTGGACAGACTGATCGCAGAGAAAGTGCAGGCAGAGCGACCTGACACCATGTTGGGAGTTGTGTGTGGGGCTCTCCATGTAGCAGATGTGAGCCTGAGGAACAGCATCTCTAACTTCCTTCACTCCTTAGAGAGGGGTCAAGTCCTTCCTGCTCACACACTTCTGAACACAGTAGATGTTGAACTTATCTATGAAGGAATCAAATATGTACTTAAGGTGACTCGGCAGTCTCCCAACTCCTACGTAGTGATAATGAATGGCTCGTGTGTGGAAGTGGATGTGCATCGGCTGAGTGATGGTGGCCTGCTCTTGTCTTATGACGGCAGCAGTTACACCACATACATGAAGGAAGAGGTGGACAGATATCGAATCACAATTGGCAATAAAACCTGTGTGTTTGAGAAGGAAAATGACCCATCTGTAATGCGCTCACCGTCTGCTGGGAAGTTAATCCAGTATATTGTGGAAGATGGCGGACATGTGTTTGCTGGCCAGTGCTATGCTGAGATTGAGGTAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCATTATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAAAATGCAACTGGACAACCCCAGTAAAGTTCAACAGGCTGAGCTTCACACGGGCAGTCTACCACAGATCCAGAGCACAGCTCTCAGAGGCGAGAAGCTCCATCGAGTTTTCCACTATGTCCTGGATAACCTGGTCAATGTGATGAATGGATACTGCCTTCCAGACCCTTTCTTCAGCAGCAGGGTAAAAGACTGGGTAGAAAGATTGATGAAGACTCTGAGAGACCCCTCCTTGCCTCTGCTAGAGCTGCAGGATATCATGACCAGTGTCTCTGGCCGGATCCCCCTCAATGTGGAGAAGTCTATTAAGAAGGAAATGGCTCAGTATGCTAGCAACATCACATCAGTCCTGTGTCAGTTTCCCAGCCAGCAGATTGCCAACATCCTAGATAGTCATGCAGCTACACTGAACCGGAAATCTGAGCGGGAAGTCTTCTTCATGAACACCCAGAGCATTGTCCAGCTGGTGCAGAGGTACCGAAGTGGCATCCGTGGCCACATGAAGGCTGTGGTGATGGATCTGCTGCGGCAGTACCTGCGAGTAGAGACACAGTTTCAGAACGGCCACTACGACAAATGTGTATTCGCCCTTCGGGAAGAGAACAAAAGCGACATGAACACCGTACTGAACTACATCTTCTCCCACGCTCAGGTCACCAAAAAGAATCTCCTGGTGACAATGCTTATT

Peptide sequence:

MRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWGDAPIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLIVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIAMGIPLFRIKDIRMMYGVSPWGDAPIDFENSAHVPCPRGHVIAARITSENPDEGFKPSSGTVQELNFRSNKNVWGYFSVAAAGGLHEFADSQFGHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLIKLLETESFQLNRIDTGWLDRLIAEKVQAERPDTMLGVVCGALHVADVSLRNSISNFLHSLERGQVLPAHTLLNTVDVELIYEGIKYVLKVTRQSPNSYVVIMNGSCVEVDVHRLSDGGLLLSYDGSSYTTYMKEEVDRYRITIGNKTCVFEKENDPSVMRSPSAGKLIQYIVEDGGHVFAGQCYAEIEVMKMVMTLTAVESGCIHYVKRPGAALDPGCVIAKMQLDNPSKVQQAELHTGSLPQIQSTALRGEKLHRVFHYVLDNLVNVMNGYCLPDPFFSSRVKDWVERLMKTLRDPSLPLLELQDIMTSVSGRIPLNVEKSIKKEMAQYASNITSVLCQFPSQQIANILDSHAATLNRKSEREVFFMNTQSIVQLVQRYRSGIRGHMKAVVMDLLRQYLRVETQFQNGHYDKCVFALREENKSDMNTVLNYIFSHAQVTKKNLLVTMLI

IRESfinder result

IRESfinder score

0.534196953

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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