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mmu_circAbi2_261
Basic information of circular RNA
PanCircBase ID:
mmu_circAbi2_261
mm39_Chr. Position ID:
chr1|60503687|60509998|+
Gene name:
Abi2
Transcript:
ENSMUST00000187709.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
8,9
Exon/intron offsets:
0,6137
Genomic length:
6311
Exon/intron sizes in nt:
87,174
Flanking exon/introns:
chr1:60492921-60503687|chr1:60509998-60515898
Splice length:
261
Other database IDs:
circBase: hsa_circ_0118832, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_39321
Human Ortholog IDs:
Mature spliced Sequence:
TATCTCTTGCTCCTCCTCCTCCTTCCATCCTACAGGTAACTCCTCAGTTACCTTTAATGGGATTTGTGGCCAGAGTCCAAGAAAATATTTCAGATACACCACCTCCACCCCCACCTGTGGAAGAGCCAGTCTTTGATGAATCCCCCCCTCCACCGCCTCCTCCAGAAGATTATGAAGAGGAGGAAGCAGCTGTGGTTGAGTACAGCGATCCGTACGCTGAAGAGGACCCACCGTGGGCGCCAAGGGCTTACTTGGAAAAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTGAGTACAGCGATCCG
59.83
GACTCTGGCCACAAATCCCA
59.96
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGTTGAGTACAGCGATCCG
59.83
TGGACTCTGGCCACAAATCC
59.96
148
PCR template sequence:
CCAGAAGATTATGAAGAGGAGGAAGCAGCTGTGGTTGAGTACAGCGATCCGTACGCTGAAGAGGACCCACCGTGGGCGCCAAGGGCTTACTTGGAAAAGGTATCTCTTGCTCCTCCTCCTCCTTCCATCCTACAGGTAACTCCTCAGTTACCTTTAATGGGATTTGTGGCCAGAGTCCAAGAAAATATTTCAGATACACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TACTTGGAAAAGGTATCTCTTGCTCC
siRNA sets
AGCAAGAGATACCTTTTCC, AAGAGATACCTTTTCCAAG, AGAGATACCTTTTCCAAGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABI2_261_ORF_1
1.3048
0.314540073
0.85969643
465
ORF sequence:
ATGGGATTTGTGGCCAGAGTCCAAGAAAATATTTCAGATACACCACCTCCACCCCCACCTGTGGAAGAGCCAGTCTTTGATGAATCCCCCCCTCCACCGCCTCCTCCAGAAGATTATGAAGAGGAGGAAGCAGCTGTGGTTGAGTACAGCGATCCGTACGCTGAAGAGGACCCACCGTGGGCGCCAAGGGCTTACTTGGAAAAGGTATCTCTTGCTCCTCCTCCTCCTTCCATCCTACAGGTAACTCCTCAGTTACCTTTAATGGGATTTGTGGCCAGAGTCCAAGAAAATATTTCAGATACACCACCTCCACCCCCACCTGTGGAAGAGCCAGTCTTTGATGAATCCCCCCCTCCACCGCCTCCTCCAGAAGATTATGAAGAGGAGGAAGCAGCTGTGGTTGAGTACAGCGATCCGTACGCTGAAGAGGACCCACCGTGGGCGCCAAGGGCTTACTTGGAAAAG
Peptide sequence:
MGFVARVQENISDTPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEYSDPYAEEDPPWAPRAYLEKVSLAPPPPSILQVTPQLPLMGFVARVQENISDTPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEYSDPYAEEDPPWAPRAYLEK
IRESfinder result
IRESfinder score
0.67182768
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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