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mmu_circAbcc5_1858
Basic information of circular RNA
PanCircBase ID:
mmu_circAbcc5_1858
mm39_Chr. Position ID:
chr16|20176118|20197516|-
Gene name:
Abcc5
Transcript:
ENSMUST00000079158.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
25,24,23,22,21,20,19,18,17,16,15,14,13
Exon/intron offsets:
0,4813,6606,8236,8444,10673,11055,11657,14751,17622,19142,21078,21273
Genomic length:
21398
Exon/intron sizes in nt:
19,09,01,87,12,91,54,10,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr16:20163544-20176118|chr16:20197516-20208118
Splice length:
1858
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATGACGCTTTTGGAGGGCAGCATTGCCGTCAGTGGGACCTTTGCTTATGTGGCCCAACAGGCCTGGATTCTCAATGCCACTCTGAGAGACAACATTCTCTTTGGGAAGGAATTTGATGAAGAGAGATACAACTCAGTGCTGAATAGCTGCTGCCTGCGGCCTGACTTGGCCATTCTCCCCAACAGCGACCTGACTGAGATTGGAGAGCGAGGAGCCAACCTGAGTGGTGGACAGCGCCAGAGAATCAGCCTTGCTAGAGCCTTGTACAGTGATAGAAGCATCTACATCCTGGATGACCCCCTCAGTGCCTTAGATGCCCATGTGGGCAACCACATCTTCAACAGTGCTATCCGGAAGCGCCTCAAGTCTAAGACGGTTCTGTTTGTTACACACCAGTTACAGTATCTGGTCGATTGTGATGAGGTGATCTTCATGAAGGAAGGCTGTATCACAGAGAGAGGTACCCATGAGGAGCTGATGAACTTAAATGGGGATTACGCTACGATTTTTAATAACCTGTTGCTGGGAGAGACACCCCCAGTTGAGATTAATTCGAAAAAGGAAGCTACTGGTTCACAAAAATCACAAGACAAGGGCCCTAAGCCAGGGTCAGTGAAGAAGGAGAAGGCGGTGAAGTCGGAGGAAGGGCAGCTTGTGCAGGTGGAGGAGAAAGGGCAAGGTTCTGTGCCTTGGTCAGTCTACTGGGTCTACATCCAGGCTGCAGGGGGCCCCTTGGCTTTCCTGGTCATCATGGTCCTCTTCATGCTGAATGTGGGCAGCACTGCCTTCAGCACCTGGTGGCTTAGCTACTGGATCAAGCAAGGAAGCGGGAACAGCACAGTGTATCAAGGGAACAGAAGCTTCGTGAGTGACAGCATGAAGGACAACCCCTTCATGCAGTACTACGCCAGCATCTACGCCCTCTCCATGGCAGTCATGCTGATCTTGAAAGCCATTCGAGGAGTTGTCTTCGTCAAGGGCACACTGAGAGCCTCCTCCCGGCTCCATGATGAGCTATTCCGAAGGATCCTTAGGAGCCCCATGAAGTTTTTTGATACTACCCCAACAGGAAGGATTCTCAACAGGTTTTCCAAAGACATGGATGAAGTGGATGTGCGGCTGCCGTTCCAGGCTGAGATGTTTATTCAGAATGTAATCCTGGTGTTCTTCTGTGTTGGAATGATTGCTGGAGTCTTCCCATGGTTCCTCGTGGCGGTGGGGCCTCTCCTCATCCTCTTCTCACTTCTCCACATTGTCTCCAGGGTCCTGATTCGTGAGCTAAAGCGGTTGGACAATATCACGCAGTCTCCTTTCCTCTCCCACATCACGTCTAGCATTCAGGGCCTGGCCACCATCCATGCCTACAACAAAAGGCAGGAGTTTTTACACAGGTATCAGGAGCTCCTGGATGACAACCAGGCTCCCTTTTTCCTGTTCACCTGTGCAATGAGGTGGCTGGCAGTGCGGCTGGACCTCATCAGCATTGCCCTGATTACCACCACTGGCCTGATGATTGTTCTCATGCATGGACAGATCCCTTCAGCCTATGCGGGGCTTGCCATCTCCTACGCTGTGCAGTTAACTGGACTATTCCAGTTCACCGTCAGACTGGCATCGGAGACAGAAGCACGGTTCACTTCCGTGGAGAGGATCAACCACTATATCAAGACTCTCTCTTTGGAAGCACCTGCCAGAATCAAGAACAAGGCTCCTCCCCATGACTGGCCCCAGGAGGGAGAAGTAACCTTTGAGAATGCAGAAATGAGATACCGGGAAAATCTCCCTCTGGTCCTTAAGAAAGTGTCCTTCACCATCAAGCCCAAGGAAAAGATAGGCATTGTGGGACGAACAGGGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCCTTCACCATCAAGCCCA
59.96
TGTTGTCTCTCAGAGTGGCA
58.59
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCCTTCACCATCAAGCCC
59.96
TGTTGTCTCTCAGAGTGGCA
58.59
151
PCR template sequence:
GAAATGAGATACCGGGAAAATCTCCCTCTGGTCCTTAAGAAAGTGTCCTTCACCATCAAGCCCAAGGAAAAGATAGGCATTGTGGGACGAACAGGGTCAGATGACGCTTTTGGAGGGCAGCATTGCCGTCAGTGGGACCTTTGCTTATGTGGCCCAACAGGCCTGGATTCTCAATGCCACTCTGAGAGACAACATTCTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-216a-5p(2), mmu-miR-7b-5p(1), mmu-miR-181a-5p(1), mmu-miR-135a-5p(1), mmu-miR-34c-5p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-7a-5p(1), mmu-miR-132-3p(1), mmu-miR-495-3p(1), mmu-miR-30d-5p(1), mmu-miR-149-5p(1), mmu-miR-433-5p(1), mmu-miR-705(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
CGAACAGGGTCAGATGACGCTTTTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABCC5_1858_ORF_1
1.2003
0.30635178
0.99999588
1974
ORF sequence:
ATGACGCTTTTGGAGGGCAGCATTGCCGTCAGTGGGACCTTTGCTTATGTGGCCCAACAGGCCTGGATTCTCAATGCCACTCTGAGAGACAACATTCTCTTTGGGAAGGAATTTGATGAAGAGAGATACAACTCAGTGCTGAATAGCTGCTGCCTGCGGCCTGACTTGGCCATTCTCCCCAACAGCGACCTGACTGAGATTGGAGAGCGAGGAGCCAACCTGAGTGGTGGACAGCGCCAGAGAATCAGCCTTGCTAGAGCCTTGTACAGTGATAGAAGCATCTACATCCTGGATGACCCCCTCAGTGCCTTAGATGCCCATGTGGGCAACCACATCTTCAACAGTGCTATCCGGAAGCGCCTCAAGTCTAAGACGGTTCTGTTTGTTACACACCAGTTACAGTATCTGGTCGATTGTGATGAGGTGATCTTCATGAAGGAAGGCTGTATCACAGAGAGAGGTACCCATGAGGAGCTGATGAACTTAAATGGGGATTACGCTACGATTTTTAATAACCTGTTGCTGGGAGAGACACCCCCAGTTGAGATTAATTCGAAAAAGGAAGCTACTGGTTCACAAAAATCACAAGACAAGGGCCCTAAGCCAGGGTCAGTGAAGAAGGAGAAGGCGGTGAAGTCGGAGGAAGGGCAGCTTGTGCAGGTGGAGGAGAAAGGGCAAGGTTCTGTGCCTTGGTCAGTCTACTGGGTCTACATCCAGGCTGCAGGGGGCCCCTTGGCTTTCCTGGTCATCATGGTCCTCTTCATGCTGAATGTGGGCAGCACTGCCTTCAGCACCTGGTGGCTTAGCTACTGGATCAAGCAAGGAAGCGGGAACAGCACAGTGTATCAAGGGAACAGAAGCTTCGTGAGTGACAGCATGAAGGACAACCCCTTCATGCAGTACTACGCCAGCATCTACGCCCTCTCCATGGCAGTCATGCTGATCTTGAAAGCCATTCGAGGAGTTGTCTTCGTCAAGGGCACACTGAGAGCCTCCTCCCGGCTCCATGATGAGCTATTCCGAAGGATCCTTAGGAGCCCCATGAAGTTTTTTGATACTACCCCAACAGGAAGGATTCTCAACAGGTTTTCCAAAGACATGGATGAAGTGGATGTGCGGCTGCCGTTCCAGGCTGAGATGTTTATTCAGAATGTAATCCTGGTGTTCTTCTGTGTTGGAATGATTGCTGGAGTCTTCCCATGGTTCCTCGTGGCGGTGGGGCCTCTCCTCATCCTCTTCTCACTTCTCCACATTGTCTCCAGGGTCCTGATTCGTGAGCTAAAGCGGTTGGACAATATCACGCAGTCTCCTTTCCTCTCCCACATCACGTCTAGCATTCAGGGCCTGGCCACCATCCATGCCTACAACAAAAGGCAGGAGTTTTTACACAGGTATCAGGAGCTCCTGGATGACAACCAGGCTCCCTTTTTCCTGTTCACCTGTGCAATGAGGTGGCTGGCAGTGCGGCTGGACCTCATCAGCATTGCCCTGATTACCACCACTGGCCTGATGATTGTTCTCATGCATGGACAGATCCCTTCAGCCTATGCGGGGCTTGCCATCTCCTACGCTGTGCAGTTAACTGGACTATTCCAGTTCACCGTCAGACTGGCATCGGAGACAGAAGCACGGTTCACTTCCGTGGAGAGGATCAACCACTATATCAAGACTCTCTCTTTGGAAGCACCTGCCAGAATCAAGAACAAGGCTCCTCCCCATGACTGGCCCCAGGAGGGAGAAGTAACCTTTGAGAATGCAGAAATGAGATACCGGGAAAATCTCCCTCTGGTCCTTAAGAAAGTGTCCTTCACCATCAAGCCCAAGGAAAAGATAGGCATTGTGGGACGAACAGGGTCAGATGACGCTTTTGGAGGGCAGCATTGCCGTCAGTGGGACCTTTGCTTATGTGGCCCAACAGGCCTGGATTCTCAATGCCACTCTGAGAGACAACATTCTCTTTGGGAAGGAATTTGA
Peptide sequence:
MTLLEGSIAVSGTFAYVAQQAWILNATLRDNILFGKEFDEERYNSVLNSCCLRPDLAILPNSDLTEIGERGANLSGGQRQRISLARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKRLKSKTVLFVTHQLQYLVDCDEVIFMKEGCITERGTHEELMNLNGDYATIFNNLLLGETPPVEINSKKEATGSQKSQDKGPKPGSVKKEKAVKSEEGQLVQVEEKGQGSVPWSVYWVYIQAAGGPLAFLVIMVLFMLNVGSTAFSTWWLSYWIKQGSGNSTVYQGNRSFVSDSMKDNPFMQYYASIYALSMAVMLILKAIRGVVFVKGTLRASSRLHDELFRRILRSPMKFFDTTPTGRILNRFSKDMDEVDVRLPFQAEMFIQNVILVFFCVGMIAGVFPWFLVAVGPLLILFSLLHIVSRVLIRELKRLDNITQSPFLSHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLISIALITTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERINHYIKTLSLEAPARIKNKAPPHDWPQEGEVTFENAEMRYRENLPLVLKKVSFTIKPKEKIGIVGRTGSDDAFGGQHCRQWDLCLCGPTGLDSQCHSERQHSLWEGI
IRESfinder result
IRESfinder score
0.520034165
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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