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mmu_circAbcc4_2380
Basic information of circular RNA
PanCircBase ID:
mmu_circAbcc4_2380
mm39_Chr. Position ID:
chr14|118771403|118891786|-
Gene name:
Abcc4
Transcript:
ENSMUST00000036554.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
18
Exon/intron indexes:
21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,19292,60770,62688,63147,63502,65322,70165,77445,77726,81139,82374,84897,93460,95626,96987,98106,120158
Genomic length:
120383
Exon/intron sizes in nt:
1,51,80,14,79,53,81,41,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr14:118767389-118771403|chr14:118891786-118905758
Splice length:
2380
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAGGGCACTCGAGTAGTTCAGCCCTTATTTTTAGGGAAAATTATTGAATATTTTGAGAAGTATGACCCCGACGACTCGGTGGCTTTGCATACAGCTTATGGCTACGCAGCAGTGCTGTCCATGTGCACGCTCATCCTGGCCATACTACATCATTTGTACTTCTACCACGTGCAGTGCGCCGGGATGAGGCTGCGGGTTGCCATGTGCCACATGATTTACCGGAAGGCACTCCGGTTAAGTAACTCGGCCATGGGGAAGACAACCACAGGCCAGATAGTTAACCTGCTGTCCAACGACGTGAACAAATTCGACCAAGTGACAATCTTCTTGCACTTTCTGTGGGCAGGGCCGCTGCAGGCCATCGCGGTAACCGTCCTCCTCTGGGTGGAGATAGGAATCTCCTGCCTGGCGGGCTTGGCCGTTCTGGTTATTCTTCTGCCTCTGCAAAGCTGCATCGGGAAGCTGTTCTCGTCACTGCGGAGTAAAACTGCGGCTTTCACGGATGCCAGGATCCGGACCATGAATGAAGTCATAACAGGCATGAGGATAATAAAGATGTATGCGTGGGAGAAATCGTTTGCTGACCTCATTGCCAATCTGAGAAAGAAGGAGATTTCCAAGATTCTGGGCAGCTCCTACCTCAGAGGGATGAACATGGCGTCGTTTTTCATCGCAAACAAAGTCATCCTGTTCGTGACCTTCACTAGCTACGTGCTGCTTGGCAATGAGATTACAGCTAGCCACGTGTTTGTGGCCATGACTCTGTACGGTGCCGTTCGGTTGACAGTCACCCTCTTCTTCCCGTCAGCCATTGAGAGAGGGTCAGAGGCCATCGTCAGCATTCGGAGGATCAAGAACTTTCTGTTACTCGATGAACTACCACAGCGCAAAGCCCATGTACCATCTGATGGCAAAGCCATTGTCCACGTGCAAGATTTCACCGCTTTCTGGGACAAGGCACTAGACAGTCCAACCCTGCAAGGTCTTTCCTTTATTGCCAGGCCTGGTGAGTTGTTAGCCGTGGTTGGCCCAGTTGGAGCAGGCAAGTCGTCGCTGTTGAGCGCAGTGCTGGGTGAGCTGCCTCCTGCCAGCGGGCTGGTCAGCGTGCACGGGAGGATCGCCTACGTTTCTCAGCAGCCCTGGGTGTTCTCGGGCACCGTGAGGAGCAATATTTTATTTGGGAAGAAATATGAGAAGGAGCGATATGAGAAAGTGATCAAGGCCTGTGCTCTGAAGAAGGACCTGCAGCTTCTGGAGGACGGGGATCTGACGGTTATAGGAGACCGGGGAGCCACGCTGAGTGGAGGCCAGAAAGCTCGGGTGAACCTGGCACGGGCCGTCTACCAGGACGCCGACATCTACCTCCTTGATGATCCGCTCAGCGCTGTCGATGCAGAAGTGGGCAAGCACCTGTTCCAACTGTGTATCTGTCAGGCGTTGCACGAGAAGATCACCATTTTAGTGACTCACCAGTTACAGTACCTCAAAGCTGCAAGCCACATCCTCATACTCAAAGATGGTGAGATGGTGCAGAAGGGGACTTACACGGAGTTTCTGAAATCTGGTGTAGATTTTGGCTCCCTGTTAAAGAAAGAAAACGAGGAAGCAGAGCCCTCCACAGCCCCAGGAACCCCGACACTCAGGAAACGAACCTTCTCCGAGGCCTCAATTTGGTCTCAGCAGTCATCCAGACCCTCGTTGAAAGACGGGGCCCCAGAGGGCCAAGACGCAGAGAACACGCAGGCAGTGCAACCCGAGGAGAGCCGTTCGGAAGGGAGAATCGGCTTCAAGGCCTACAAGAATTACTTCTCGGCGGGCGCATCCTGGTTCTTCATCATTTTCCTTGTGCTGCTTAACATGGTGGGCCAGGTTTTCTATGTTCTTCAGGACTGGTGGCTTTCCCACTGGGCGAACAAGCAAGGTGCACTGAACAACACCAGAAATGCGAATGGAAATATAACGGAGACCCTAGACCTCAGCTGGTACTTAGGAATTTACGCAGGTCTAACTGCGGTCACCGTCCTTTTTGGCATAGCGAGATCCCTACTGGTGTTCTATATCCTTGTGAACGCTTCCCAGACTTTGCACAACAGGATGTTTGAGTCCATACTGAAGGCTCCCGTGTTGTTCTTCGACAGAAATCCAATCGGGAGGATTTTAAATCGTTTCTCCAAAGACATCGGACACATGGATGATTTGCTTCCCCTGACGTTCCTGGACTTCATCCAGACGTTGCTCCTCGTCGTAAGTGTGATCGCTGTGGCCGCGGCCGTGATCCCTTGGATCCTCATACCATTGGTTCCGCTCTCAGTCGTCTTCCTGGTTCTTCGGAGATACTTCTTAGAGACGTCACGGGATGTCAAGCGCCTGGAATCCACAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTGGTTCCGCTCTCAGTCG
60.11
TGTATGCAAAGCCACCGAGT
59.96
179
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTCTCAGTCGTCTTCCTGG
59.83
TGTATGCAAAGCCACCGAGT
59.96
170
PCR template sequence:
TGGATCCTCATACCATTGGTTCCGCTCTCAGTCGTCTTCCTGGTTCTTCGGAGATACTTCTTAGAGACGTCACGGGATGTCAAGCGCCTGGAATCCACAAGAGGGCACTCGAGTAGTTCAGCCCTTATTTTTAGGGAAAATTATTGAATATTTTGAGAAGTATGACCCCGACGACTCGGTGGCTTTGCATACAGCTTATG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-16-5p(2), mmu-miR-15a-5p(2), mmu-let-7b-5p(2), mmu-miR-22-3p(2), mmu-miR-134-5p(1), mmu-let-7a-5p(1), mmu-miR-375-3p(1), mmu-let-7e-5p(1), mmu-miR-135a-5p(1), mmu-let-7c-5p(1), mmu-miR-15b-5p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-7a-5p(1), mmu-miR-709(1), mmu-miR-326-3p(1), mmu-miR-339-5p(1), mmu-let-7d-5p(1), mmu-miR-182-5p(1), mmu-miR-301b-3p(1), mmu-miR-194-5p(1), mmu-miR-541-5p(1), mmu-miR-301a-3p(1), mmu-miR-98-5p(1), mmu-miR-335-3p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGAATCCACAAGAGGGCACTCGAG
siRNA sets
TCGAGTGCCCTCTTGTGGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCABCC4_2380_ORF_1
1.2854
0.308247102
0.999999838
2403
ORF sequence:
ATGTCAAGCGCCTGGAATCCACAAGAGGGCACTCGAGTAGTTCAGCCCTTATTTTTAGGGAAAATTATTGAATATTTTGAGAAGTATGACCCCGACGACTCGGTGGCTTTGCATACAGCTTATGGCTACGCAGCAGTGCTGTCCATGTGCACGCTCATCCTGGCCATACTACATCATTTGTACTTCTACCACGTGCAGTGCGCCGGGATGAGGCTGCGGGTTGCCATGTGCCACATGATTTACCGGAAGGCACTCCGGTTAAGTAACTCGGCCATGGGGAAGACAACCACAGGCCAGATAGTTAACCTGCTGTCCAACGACGTGAACAAATTCGACCAAGTGACAATCTTCTTGCACTTTCTGTGGGCAGGGCCGCTGCAGGCCATCGCGGTAACCGTCCTCCTCTGGGTGGAGATAGGAATCTCCTGCCTGGCGGGCTTGGCCGTTCTGGTTATTCTTCTGCCTCTGCAAAGCTGCATCGGGAAGCTGTTCTCGTCACTGCGGAGTAAAACTGCGGCTTTCACGGATGCCAGGATCCGGACCATGAATGAAGTCATAACAGGCATGAGGATAATAAAGATGTATGCGTGGGAGAAATCGTTTGCTGACCTCATTGCCAATCTGAGAAAGAAGGAGATTTCCAAGATTCTGGGCAGCTCCTACCTCAGAGGGATGAACATGGCGTCGTTTTTCATCGCAAACAAAGTCATCCTGTTCGTGACCTTCACTAGCTACGTGCTGCTTGGCAATGAGATTACAGCTAGCCACGTGTTTGTGGCCATGACTCTGTACGGTGCCGTTCGGTTGACAGTCACCCTCTTCTTCCCGTCAGCCATTGAGAGAGGGTCAGAGGCCATCGTCAGCATTCGGAGGATCAAGAACTTTCTGTTACTCGATGAACTACCACAGCGCAAAGCCCATGTACCATCTGATGGCAAAGCCATTGTCCACGTGCAAGATTTCACCGCTTTCTGGGACAAGGCACTAGACAGTCCAACCCTGCAAGGTCTTTCCTTTATTGCCAGGCCTGGTGAGTTGTTAGCCGTGGTTGGCCCAGTTGGAGCAGGCAAGTCGTCGCTGTTGAGCGCAGTGCTGGGTGAGCTGCCTCCTGCCAGCGGGCTGGTCAGCGTGCACGGGAGGATCGCCTACGTTTCTCAGCAGCCCTGGGTGTTCTCGGGCACCGTGAGGAGCAATATTTTATTTGGGAAGAAATATGAGAAGGAGCGATATGAGAAAGTGATCAAGGCCTGTGCTCTGAAGAAGGACCTGCAGCTTCTGGAGGACGGGGATCTGACGGTTATAGGAGACCGGGGAGCCACGCTGAGTGGAGGCCAGAAAGCTCGGGTGAACCTGGCACGGGCCGTCTACCAGGACGCCGACATCTACCTCCTTGATGATCCGCTCAGCGCTGTCGATGCAGAAGTGGGCAAGCACCTGTTCCAACTGTGTATCTGTCAGGCGTTGCACGAGAAGATCACCATTTTAGTGACTCACCAGTTACAGTACCTCAAAGCTGCAAGCCACATCCTCATACTCAAAGATGGTGAGATGGTGCAGAAGGGGACTTACACGGAGTTTCTGAAATCTGGTGTAGATTTTGGCTCCCTGTTAAAGAAAGAAAACGAGGAAGCAGAGCCCTCCACAGCCCCAGGAACCCCGACACTCAGGAAACGAACCTTCTCCGAGGCCTCAATTTGGTCTCAGCAGTCATCCAGACCCTCGTTGAAAGACGGGGCCCCAGAGGGCCAAGACGCAGAGAACACGCAGGCAGTGCAACCCGAGGAGAGCCGTTCGGAAGGGAGAATCGGCTTCAAGGCCTACAAGAATTACTTCTCGGCGGGCGCATCCTGGTTCTTCATCATTTTCCTTGTGCTGCTTAACATGGTGGGCCAGGTTTTCTATGTTCTTCAGGACTGGTGGCTTTCCCACTGGGCGAACAAGCAAGGTGCACTGAACAACACCAGAAATGCGAATGGAAATATAACGGAGACCCTAGACCTCAGCTGGTACTTAGGAATTTACGCAGGTCTAACTGCGGTCACCGTCCTTTTTGGCATAGCGAGATCCCTACTGGTGTTCTATATCCTTGTGAACGCTTCCCAGACTTTGCACAACAGGATGTTTGAGTCCATACTGAAGGCTCCCGTGTTGTTCTTCGACAGAAATCCAATCGGGAGGATTTTAAATCGTTTCTCCAAAGACATCGGACACATGGATGATTTGCTTCCCCTGACGTTCCTGGACTTCATCCAGACGTTGCTCCTCGTCGTAAGTGTGATCGCTGTGGCCGCGGCCGTGATCCCTTGGATCCTCATACCATTGGTTCCGCTCTCAGTCGTCTTCCTGGTTCTTCGGAGATACTTCTTAGAGACGTCACGGGATGTCAAGCGCCTGGAATCCACA
Peptide sequence:
MSSAWNPQEGTRVVQPLFLGKIIEYFEKYDPDDSVALHTAYGYAAVLSMCTLILAILHHLYFYHVQCAGMRLRVAMCHMIYRKALRLSNSAMGKTTTGQIVNLLSNDVNKFDQVTIFLHFLWAGPLQAIAVTVLLWVEIGISCLAGLAVLVILLPLQSCIGKLFSSLRSKTAAFTDARIRTMNEVITGMRIIKMYAWEKSFADLIANLRKKEISKILGSSYLRGMNMASFFIANKVILFVTFTSYVLLGNEITASHVFVAMTLYGAVRLTVTLFFPSAIERGSEAIVSIRRIKNFLLLDELPQRKAHVPSDGKAIVHVQDFTAFWDKALDSPTLQGLSFIARPGELLAVVGPVGAGKSSLLSAVLGELPPASGLVSVHGRIAYVSQQPWVFSGTVRSNILFGKKYEKERYEKVIKACALKKDLQLLEDGDLTVIGDRGATLSGGQKARVNLARAVYQDADIYLLDDPLSAVDAEVGKHLFQLCICQALHEKITILVTHQLQYLKAASHILILKDGEMVQKGTYTEFLKSGVDFGSLLKKENEEAEPSTAPGTPTLRKRTFSEASIWSQQSSRPSLKDGAPEGQDAENTQAVQPEESRSEGRIGFKAYKNYFSAGASWFFIIFLVLLNMVGQVFYVLQDWWLSHWANKQGALNNTRNANGNITETLDLSWYLGIYAGLTAVTVLFGIARSLLVFYILVNASQTLHNRMFESILKAPVLFFDRNPIGRILNRFSKDIGHMDDLLPLTFLDFIQTLLLVVSVIAVAAAVIPWILIPLVPLSVVFLVLRRYFLETSRDVKRLEST
IRESfinder result
IRESfinder score
0.41393889
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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