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mmu_circ2810407A14Rik_151
Basic information of circular RNA
PanCircBase ID:
mmu_circ2810407A14Rik_151
mm39_Chr. Position ID:
chr16|87628285|87630673|+
Gene name:
2810407A14Rik
Transcript:
ENSMUST00000189929.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,4
Exon/intron offsets:
0,2325
Genomic length:
2388
Exon/intron sizes in nt:
88,63
Flanking exon/introns:
chr16:87626444-87628285|chr16:87630673-87632534
Splice length:
151
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ACCTTTGATCTCCCGAAACTACATCTTCCTGGTATGGTGTTACCCACCTGCAGGCCGCTCAGTCTTCACAAGGGAGTCTTTTCCAGGAGCACATAAGAATTCATCTCGCGATGTCATCCACTCAAGGGCACGAGCTTCCAAGTCTCCTTGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTCGCGATGTCATCCACTCA
59.9
TCCCTTGTGAAGACTGAGCG
59.68
122
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCGCGATGTCATCCACTC
59.62
TCCCTTGTGAAGACTGAGCG
59.68
123
PCR template sequence:
TCTTTTCCAGGAGCACATAAGAATTCATCTCGCGATGTCATCCACTCAAGGGCACGAGCTTCCAAGTCTCCTTGGACCTTTGATCTCCCGAAACTACATCTTCCTGGTATGGTGTTACCCACCTGCAGGCCGCTCAGTCTTCACAAGGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CAAGTCTCCTTGGACCTTTGATCTCC
siRNA sets
AGATCAAAGGTCCAAGGAG, GAGATCAAAGGTCCAAGGA, ATCAAAGGTCCAAGGAGAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2810407A14RIK_151_ORF_1
0.4703
0.071597765
0.063128925
192
ORF sequence:
ATGTCATCCACTCAAGGGCACGAGCTTCCAAGTCTCCTTGGACCTTTGATCTCCCGAAACTACATCTTCCTGGTATGGTGTTACCCACCTGCAGGCCGCTCAGTCTTCACAAGGGAGTCTTTTCCAGGAGCACATAAGAATTCATCTCGCGATGTCATCCACTCAAGGGCACGAGCTTCCAAGTCTCCTTGG
Peptide sequence:
MSSTQGHELPSLLGPLISRNYIFLVWCYPPAGRSVFTRESFPGAHKNSSRDVIHSRARASKSPW
IRESfinder result
IRESfinder score
0.684408049
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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