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mmu_circ2310022A10Rik_288
Basic information of circular RNA
PanCircBase ID:
mmu_circ2310022A10Rik_288
mm39_Chr. Position ID:
chr7|27270988|27274165|+
Gene name:
2310022A10Rik
Transcript:
ENSMUST00000067386.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
7,8
Exon/intron offsets:
0,3027
Genomic length:
3177
Exon/intron sizes in nt:
1,38,150
Flanking exon/introns:
chr7:27265153-27270988|chr7:27274165-27278137
Splice length:
288
Other database IDs:
CIRCpedia: MMU_CIRCpedia_14991, circAtlas: mmu-2310022A10Rik_0003
circAtlas: hsa-C19orf47_0003, CIRCpedia: HSA_CIRCpedia_25931
Human Ortholog IDs:
Mature spliced Sequence:
CCGCTTCTCGAATGATTGCCAACAGCCTGAACCATGACTCTCCACCCCATACCCCCACACGGCGGTCAGACAACAGCACCTCCAAGATCTCCGTCACTGTGTCCAACAAGATGGCAGCGAAGAGTGCCAAGGCTGCCGCTCTGGCCCACAGGGAGGAGGAAAGCCTGGTTGTTCCCACCAAGCGGCGGCGGGTCACGGCTGAGATGGAGGGAAAGTACATCATCCACATGCCCAAGGGGACCACGCCCCGCACCCGGAAGATCCTGGAGCAGCAGCAGGCAGCAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCATCCACATGCCCAAGGG
60.11
TGGAGGTGCTGTTGTCTGAC
59.89
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATCATCCACATGCCCAAGGG
60.11
CGGAGATCTTGGAGGTGCTG
60.18
163
PCR template sequence:
CGGGTCACGGCTGAGATGGAGGGAAAGTACATCATCCACATGCCCAAGGGGACCACGCCCCGCACCCGGAAGATCCTGGAGCAGCAGCAGGCAGCAAAAGCCGCTTCTCGAATGATTGCCAACAGCCTGAACCATGACTCTCCACCCCATACCCCCACACGGCGGTCAGACAACAGCACCTCCAAGATCTCCGTCACTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-128-3p(1), mmu-miR-182-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGGCAGCAAAAGCCGCTTCTCGAAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2310022A10RIK_288_ORF_1
1.2639
0.541468195
0.966999035
564
ORF sequence:
ATGATTGCCAACAGCCTGAACCATGACTCTCCACCCCATACCCCCACACGGCGGTCAGACAACAGCACCTCCAAGATCTCCGTCACTGTGTCCAACAAGATGGCAGCGAAGAGTGCCAAGGCTGCCGCTCTGGCCCACAGGGAGGAGGAAAGCCTGGTTGTTCCCACCAAGCGGCGGCGGGTCACGGCTGAGATGGAGGGAAAGTACATCATCCACATGCCCAAGGGGACCACGCCCCGCACCCGGAAGATCCTGGAGCAGCAGCAGGCAGCAAAAGCCGCTTCTCGAATGATTGCCAACAGCCTGAACCATGACTCTCCACCCCATACCCCCACACGGCGGTCAGACAACAGCACCTCCAAGATCTCCGTCACTGTGTCCAACAAGATGGCAGCGAAGAGTGCCAAGGCTGCCGCTCTGGCCCACAGGGAGGAGGAAAGCCTGGTTGTTCCCACCAAGCGGCGGCGGGTCACGGCTGAGATGGAGGGAAAGTACATCATCCACATGCCCAAGGGGACCACGCCCCGCACCCGGAAGATCCTGGAGCAGCAGCAGGCAGCAAAA
Peptide sequence:
MIANSLNHDSPPHTPTRRSDNSTSKISVTVSNKMAAKSAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTPRTRKILEQQQAAKAASRMIANSLNHDSPPHTPTRRSDNSTSKISVTVSNKMAAKSAKAAALAHREEESLVVPTKRRRVTAEMEGKYIIHMPKGTTPRTRKILEQQQAAK
IRESfinder result
IRESfinder score
0.165536813
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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