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mmu_ciRars_567
Basic information of circular RNA
PanCircBase ID:
mmu_ciRars_567
mm39_Chr. Position ID:
chr11|35707609|35708176|-
Gene name:
Rars
Transcript:
ENSMUST00000018992.4
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
567
Exon/intron sizes in nt:
567
Flanking exon/introns:
chr11:35707573-35708176
Splice length:
567
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTTTGCGGGTTTGACTAAAGCCCCATTGCAGATATTGACAGATACATAGAAACTACCTTACAGAGGTACAAAGGCCGTGTGACTTCTGCCATGAGATAAGCTGTCATGCAGCCCCTTTGACCTCAAACTTGAAATCCCAGCTTTGTAGATGAGAAATAAGATTTACTAGAACTCTCTACCCGTAGTCGGGTTTGTGTAGTTTTGCTCTGATGGGCATCCTGTGCTTTCCGTGTGGTGGGAAGTGTGAGGGCGGGCACTGCCGTATCCTCAGTGCCTGAGCCTCTTGTTAAAACCGAGCCGTGCTCTCATAGGCACAAACACAGGCTGCCTCAGCACTGGCCGCATAGCTGAGTGTGGCCTACCACTCCTGACGCTCTGTTCTGAGGCCCTGACCTCACAGGCGTGTATCAGTTTAAGACCTGCTGTAGAAACTGTTAGCATGTTCTTGCTTTTTGGTGGGCAGCTCTGGGGAATAGAACTTTTATAATAACGCTTGCCTAACAGGATTGTCCTGTGGCCCCTGAGCACAGAAGCCTGACATCTTTTTCTTTATTAGTAACTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGAGCACAGAAGCCTGACA
59.97
TCATGGCAGAAGTCACACGG
60.32
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTGAGCACAGAAGCCTGAC
60.67
TCATGGCAGAAGTCACACGG
60.32
142
PCR template sequence:
CTCTGGGGAATAGAACTTTTATAATAACGCTTGCCTAACAGGATTGTCCTGTGGCCCCTGAGCACAGAAGCCTGACATCTTTTTCTTTATTAGTAACTCAGTAAGTTTGCGGGTTTGACTAAAGCCCCATTGCAGATATTGACAGATACATAGAAACTACCTTACAGAGGTACAAAGGCCGTGTGACTTCTGCCATGAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-miR-196a-5p(1), mmu-miR-320-3p(1), mmu-miR-214-3p(1), mmu-miR-22-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATTAGTAACTCAGTAAGTTTGCGGG
siRNA sets
AAACTTACTGAGTTACTAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.825198233
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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