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mmu_ciRars_567

Basic information of circular RNA
PanCircBase ID:

mmu_ciRars_567

mm39_Chr. Position ID:

chr11|35707609|35708176|-

Gene name:

Rars

Transcript:

ENSMUST00000018992.4

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

10

Exon/intron offsets:

0

Genomic length:

567

Exon/intron sizes in nt:

567

Flanking exon/introns:

chr11:35707573-35708176

Splice length:

567

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTAAGTTTGCGGGTTTGACTAAAGCCCCATTGCAGATATTGACAGATACATAGAAACTACCTTACAGAGGTACAAAGGCCGTGTGACTTCTGCCATGAGATAAGCTGTCATGCAGCCCCTTTGACCTCAAACTTGAAATCCCAGCTTTGTAGATGAGAAATAAGATTTACTAGAACTCTCTACCCGTAGTCGGGTTTGTGTAGTTTTGCTCTGATGGGCATCCTGTGCTTTCCGTGTGGTGGGAAGTGTGAGGGCGGGCACTGCCGTATCCTCAGTGCCTGAGCCTCTTGTTAAAACCGAGCCGTGCTCTCATAGGCACAAACACAGGCTGCCTCAGCACTGGCCGCATAGCTGAGTGTGGCCTACCACTCCTGACGCTCTGTTCTGAGGCCCTGACCTCACAGGCGTGTATCAGTTTAAGACCTGCTGTAGAAACTGTTAGCATGTTCTTGCTTTTTGGTGGGCAGCTCTGGGGAATAGAACTTTTATAATAACGCTTGCCTAACAGGATTGTCCTGTGGCCCCTGAGCACAGAAGCCTGACATCTTTTTCTTTATTAGTAACTCA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

CTGAGCACAGAAGCCTGACA

59.97

TCATGGCAGAAGTCACACGG

60.32

141

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CCTGAGCACAGAAGCCTGAC

60.67

TCATGGCAGAAGTCACACGG

60.32

142

PCR template sequence:

CTCTGGGGAATAGAACTTTTATAATAACGCTTGCCTAACAGGATTGTCCTGTGGCCCCTGAGCACAGAAGCCTGACATCTTTTTCTTTATTAGTAACTCAGTAAGTTTGCGGGTTTGACTAAAGCCCCATTGCAGATATTGACAGATACATAGAAACTACCTTACAGAGGTACAAAGGCCGTGTGACTTCTGCCATGAGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

5

Interacting miRNAs (#binding sites)

mmu-miR-199a-5p(1), mmu-miR-196a-5p(1), mmu-miR-320-3p(1), mmu-miR-214-3p(1), mmu-miR-22-3p(1)

siRNAs for circular RNA silencing
Junction sequence

TATTAGTAACTCAGTAAGTTTGCGGG

siRNA sets

AAACTTACTGAGTTACTAA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.825198233

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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