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mmu_ciRars_4358
Basic information of circular RNA
PanCircBase ID:
mmu_ciRars_4358
mm39_Chr. Position ID:
chr11|35719640|35723998|-
Gene name:
Rars
Transcript:
ENSMUST00000018992.4
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
4358
Exon/intron sizes in nt:
4358
Flanking exon/introns:
chr11:35719640-35723998
Splice length:
4358
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGCTCCGGATGTTTTCAAATAATTTGTTGTTGCTGTTGTTGTTGTTACTGAAGATTCTAGAAGTACGTGCTATAAGAATTGAGAAGAGGAGTTTGTTTAGAAATCAGTTTTCCTGCATAAGGCAAGTTAGGACTCATTAGGCTGGAGAAAGTGGGGCGGCACTGGCTTCCCAGGGCCCTTTTAAGTAGTTTATTATGATACCCCTTTTAAGTGGTTCATTACGATGGTTTAATGGTTTGGAAGTTGAGATTTCTTCAAAGGCTTATGTCCATGCTGTCAAAGGAATGTCTTTTGTTTTTAAAACCATTTTAACTACTGTAAAAGAAACAGTTTCTCAGGAGCAACTAACAGGGATGTTTTAAAATGCACTCACTGATTCCTAACTCCTCTGCAATGAAGTTGTTTATTTTGCAGTTTTGTGTTATGCTTTATAGCATCTTTTGGGGTTCTTTTCATTTAATGTTGCGAAACTTTCTCTGCCTCTCCTCCTCCCCATCCAACAGCCTCTCTATACAGACCAGGCTGGCTTCTGGGCTGGGCTGCCTCCATCTTGAAGTGCATTTTCTTCTTCTGTGTCTCTCAGGCTGGGTTTACAGGTGTGTACTACCATGCCACCATTTGAATAGCCTTACAGTCCAGCAATGCTTATCAATGTAGTTTGTTTGTTTGTTTGTTTTAAAGAAAGCCTACCTTCAGCTTCTTTGGCCTGCCTTTCAGGTTTGCTGATGACACAGCCTAGCATGTTGCCTCATTCATTGTTCTCCAGTGTGTGTACTTCCTTCTGGATTGCACAGGCACCGCTCCAAGTCCTCATCTCAGGCGTCTGACCAGTCCTTTGAAGCACTTTATTATCTGTGTGGAGGCAGCTGTGCTCAGATAGCTTTGTCAAGTGCTTGTGCGCTGCTGAAGGAAGTAAGGGAAATAAATCCACAGCTGTGGTGAAAACAAACTTCTCTGTGTGCAAGAGACAAGGGCAGGCTGATCTTTTAGTTCCAGACCAGCCTGGTCTACAGAGTGAGTCTCGGGACAACCAGGGCTACACAGAGAAACCCTGTCTCGGAAAACCAGAGAGAGGGAGAGGGGGGGAGGGAGGGAGCATCAAAGGACTAAAGTGCTGTGTGCCATAACTTCACTCTGCCGCCTTGCCCTAGTTCTTGGGCCACATACTCCACCTTGAAAGCACGTACCGGATGGTTCTGGCAGGAGGTGTTTTACCCATGTTCTCATAAGCACGGCTGCCTCAGTTTTTTCTTATTGCTTTTCTGTCTTTTTTATGTGTTTTTAAGATTTAGAAACGTATTTAGTATTGTTTTTGAGGCACAGTTTCTATTTAGCCCTGACCTTTCTGGAGCTGTCATAAGTAGACCAGTTCTCAAACTCACATAGATCCTCTGCCTCTACCTCTGCCTCCAGAGCCTAGCCACTTAGTACATTTATTAAAGTACTCACAGAAAGCTTTTTCACACCGATAGCACTCATACATGATTGCTGTCACGATAATGCCACTTTTAAAGAATCCGTAGATTTTCGGGAATCTGCTTCTAATCTTAGTTTTCTCAAAAGCTGTTATTTTTACAAATTTTTATAATGTGAGGTTTTACAAAACCTCAAAACAGTAAAGGTGATTGTACCAAAATGTGTCTGCTTTTGGCTTTATTTGAGTCCAGGTCTCACAGTCCAGCCCTGGCTGGCGTGGTTTGTGCTCTGTGGCCTGTAGCTCTCAGACTTGTGCAGTCCTCCGTCTTGGTCTCCCAGGACTAGCTAAGAGTAGTAGTAACTCCTTGCTCCCACAGGCCTAGGAATCATGGGAGAAAGGAAGACACACACGTATAAATCAAGTAAAGAAAAGTTGCCAAGAACTTGTCAGGCTGGCTCACCTCTGTAGTCCTAGCCCCGAAAGGCAAAGCAGGAAGATGGCTGTGTGTGCAGGGCCAGCCTGGGCTATAGCTCAGGAGCCGGCCTGTGTGAGGCCGTGGGTGCAGTCCAGCTCCAGATAAAACTGCATGTGGCTGCGCGTGGTGGTGCGCGCCTTGATTCCATCACTTTCTGTGGGAGGCAAGAGGATCAGGGAAGGAAGGCAGGAAAGAAAAAGTGTTACATTGATTATATTCAAATGTTAATTTGAATGAAGTCAAGTACAGTGGCTTCTGTGTGTTTGTGTATAGGTTTATTTTAAAAGATACAAGTTTTAAAAAGTTACAAGGTTATTAGAGATTTTTAAGACTTAGGATTATATGTAACTGACATTTTCTATTGGAAATCTTTAGATTGTGAAAAGCATGAATAAGAAGTTGATAAATAAAAATTTAAAACTGATCAGGCATGGGAGCTGATCCTATATAGCCCAGCCCTTTGGGAAGTGAAGGCAGGAGAAGCAGGATTTCTAGACCAGCTTCAGCAACACGAGACTCTCACAACAAACCAAAAAAAGCAGACCACCAAAACCCACTTAACTCAGCTCTTTTTGTTTGTTTCCTTGTCGCTATTTGTAGTTTTCTGGCATGGAAATTCTCAACCAGAGTACAAGCTTTATTTTACACAGTTGTTTTACCACTATGTCTGTTAGCAATCTTTGTAACCGTGTACAGAATTACACGGTTGCCAACACGCACTCCCATAGAGAACCTCGCTTGCACTGAGCCTTCTGCAGGGCTGATGGACTTCCAGAGCCCAATTTCAGTTTATCTCAGGCTCTCTTGAGCCCTCCCCACCCTTCAATAGCCACTTCAGTATCTGACCTAACATTTTACCAGGCTTTTTGATGAGTTAAAGAATATAATTTTGCTGAGCACAGGGGTGCACACTTTTAATTCCAGCATTCAGGAGGCAGAGTCAGGCAGTTCTTTGAGTTCAAGAGTAGCTTGATCTACACAGAGAAACCCTATCTAGAAAAAACAAACAAAGACTATAACTTGATAGACTGGGGCAGGAAGATTGTTGTAAGTTTGCAGCCAGCCTGAGGTATAAAGTGACCCGGTATCAATCAGTCAATAACACGTGTGTAAATGTTTTTATTTTGTAGCAGAGACGTCCGAGGAGGGTGGGACTTGACTTCTACATTCCTGTACACCTGGTTTGTGATCGGTCAGTTACTAATTTACATGGAAGTGATGCTAGTGGGGACATCAGGCCTGTTAAGTAGATGGAAGTCAGAAGAGCATGCACACGAACACTGGTTATAGAACTTGACACTGAGTACCTAACTACTACCTAACTACTGTTACCATTCCTGTTTCACACTGCAGGTCTGTCAGGTTTGTTGCCTTTTTGAGACAGGTTATTACTATATAGCCCAAGCTGACTGCTCCTCCTGTCTCAGCCTAACTGCTAGGATTTTACATGTGAGCCTCTGGGCCTGGCTAGTGATGGCTGAGACACTGGACTGGAGGTAGCTCCCTGGAAGAGCATCCACTTTGTGGCAGGCTTGAAGCTCTACGTTCACATCTTAGTACACAGGAAGTGTTTTCATTATGCTCCATGAACAGTATCTGCTTACTCACTGCGGTTAAGAGGTTGAATCCAGGACCTCTGATCGGCCTACAGGTCACCTCCCTTCCTTTTTATCCTTTATTGAGATGAGTTCTCACTGGGTCAGCCTAGTTGCCCTGGATCAGGCTGTCGTCTTACTTTTGTAGTCTTTTACACACACACACACACACAGAGTGTTTTGATAACATCTTAGATGCCGGGTGCACTGGCTAGTACTGTGAATGAAACACTTGTCTGCACTCAGGAGTCTGATAGTAGAGACACAATTTTGTGAAGGTGTAATGAGTGATAATAAGAGTAATTATATTTAAAAAAGAGTAATTATATTCTATCTTAGATGAGTGCACCACTTAAAAGCTGTTATGTTAACAAGTAGGAGTTATTGCTATGAAGGCAAAGCCTGTCTTTCTGGCACAGCACTGTCTCTCTGGGTTCCCTCCTGGGTTCCTCTCCTCCTGCCCTGAAAAGGTTGGTTCTGGAGAGTGTGGCACTGCTTGTTTTGTCCTGAGTTCCCACTGAATGCTTGGTATGACGCAGTTTAGGGCTCTCTTCTGTTTCAGATCTCTATGTGGCCCTGGCTGTCCTGGAACTCACTACATATACAAGGCTGGCCCTGAACTCAGAGATCTGCCTGTCTCTATGTCCCTGGTGCTAGGCCTCACTTCTGTTTTCTATTTAGTCTCGACTCTTTACTCTTTGTGATCTGATAAGGCAAATGCAGAATCAATGGCCTCGATGCCTCCTGGGAATGTCTTAGGATCCTGTTCTGTGTCGCCACTCCCATCCTGGTTCTAATCTGCATATTTGGGGGGAATGTGTGATGTCATACTACTTCACTGAGACACTGCTGTTCTTTTCCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCACTCCCATCCTGGTTC
60.08
ACAACAACAACAGCAACAACA
57.62
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCACTCCCATCCTGGTTC
60.08
ACAACAACAACAGCAACAACAA
58.28
141
PCR template sequence:
TTCTGTGTCGCCACTCCCATCCTGGTTCTAATCTGCATATTTGGGGGGAATGTGTGATGTCATACTACTTCACTGAGACACTGCTGTTCTTTTCCTGCAGGTAAGTGCTCCGGATGTTTTCAAATAATTTGTTGTTGCTGTTGTTGTTGTTACTGAAGATTCTAGAAGTACGTGCTATAAGAATTGAGAAGAGGAGTTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
43
Interacting miRNAs (#binding sites)
mmu-miR-709(3), mmu-miR-495-3p(3), mmu-miR-146b-5p(3), mmu-miR-199a-5p(2), mmu-miR-146a-5p(2), mmu-miR-1187(2), mmu-miR-574-5p(2), mmu-miR-23b-3p(1), mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-1a-3p(1), mmu-miR-32-5p(1), mmu-miR-206-3p(1), mmu-let-7b-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-205-5p(1), mmu-miR-106b-5p(1), mmu-miR-335-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-184-3p(1), mmu-miR-23a-3p(1), mmu-miR-143-3p(1), mmu-miR-24-3p(1), mmu-miR-503-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-411-3p(1), mmu-miR-182-5p(1), mmu-miR-301b-3p(1), mmu-miR-340-5p(1), mmu-miR-466d-3p(1), mmu-miR-705(1), mmu-miR-802-5p(1), mmu-miR-342-3p(1), mmu-miR-466a-5p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-188-3p(1), mmu-miR-3470b(1), mmu-miR-544-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTTTCCTGCAGGTAAGTGCTCCGG
siRNA sets
ACTTACCTGCAGGAAAAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.824673026
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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