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mmu_ciPsmb6_81
Basic information of circular RNA
PanCircBase ID:
mmu_ciPsmb6_81
mm39_Chr. Position ID:
chr11|70416321|70416402|+
Gene name:
Psmb6
Transcript:
ENSMUST00000145503.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
81
Exon/intron sizes in nt:
81
Flanking exon/introns:
chr11:70416321-70416710
Splice length:
81
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGAAAGAGCCAGAGTTCGGAAGACATGTACTAGGCCTGACGGGAGGAAAAACATGAAGCCCGAGTGGGTTTGACTGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGGAAAAACATGAAGCCCG
59.8
TGTCTTCCGAACTCTGGCTC
59.4
65
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGGGAGGAAAAACATGAAGCC
59.8
TGTCTTCCGAACTCTGGCTC
59.4
67
PCR template sequence:
GACGGGAGGAAAAACATGAAGCCCGAGTGGGTTTGACTGAGTGAGGAAAGAGCCAGAGTTCGGAAGACATGTACTAGGCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGGGTTTGACTGAGTGAGGAAAGAGC
siRNA sets
TTCCTCACTCAGTCAAACC, TTTCCTCACTCAGTCAAAC, TCCTCACTCAGTCAAACCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.363351073
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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