top of page
mmu_ciPsmb6_382
Basic information of circular RNA
PanCircBase ID:
mmu_ciPsmb6_382
mm39_Chr. Position ID:
chr11|70416321|70416703|+
Gene name:
Psmb6
Transcript:
ENSMUST00000145503.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
382
Exon/intron sizes in nt:
382
Flanking exon/introns:
chr11:70416321-70416710
Splice length:
382
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGAAAGAGCCAGAGTTCGGAAGACATGTACTAGGCCTGACGGGAGGAAAAACATGAAGCCCGAGTGGGTTTGACTGAGTGGGTTGGGGGGGGGGGAGCGCTGTGTTCTGCGAGAGGGAGAGGGATTCCTTGAATGCTGGCGTGGGGTGATACCTTTCGTGATGAGAGGTGAACAGTAGGCTGAAGCATAAGAGTCTGAATCCTGGGGTTTGGAGATTGTAGTTTTTATATTCTCTGACGTGTTGAGCCCCCTTAAGATTTGATAATAGGTTCGCGGAGCACGAATTTTGCATTATAAAATCCGGGTGAAGAATTATTGAGGTCGGTATATACTCGAGAATGCGGTAAGGCTAAAAGAGTTACCTTTTTTACACTATTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCGAGAATGCGGTAAGGC
60.18
CCCCAACCCACTCAGTCAAA
59.82
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TACTCGAGAATGCGGTAAGGC
59.93
CCCCAACCCACTCAGTCAAA
59.82
141
PCR template sequence:
CACGAATTTTGCATTATAAAATCCGGGTGAAGAATTATTGAGGTCGGTATATACTCGAGAATGCGGTAAGGCTAAAAGAGTTACCTTTTTTACACTATTCGTGAGGAAAGAGCCAGAGTTCGGAAGACATGTACTAGGCCTGACGGGAGGAAAAACATGAAGCCCGAGTGGGTTTGACTGAGTGGGTTGGGGGGGGGGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTACACTATTCGTGAGGAAAGAGC
siRNA sets
TTTCCTCACGAATAGTGTA, TCTTTCCTCACGAATAGTG, CTTTCCTCACGAATAGTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.507378233
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page