top of page
mmu_ciPrrc2c_323
Basic information of circular RNA
PanCircBase ID:
mmu_ciPrrc2c_323
mm39_Chr. Position ID:
chr1|162508466|162508789|-
Gene name:
Prrc2c
Transcript:
ENSMUST00000182149.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
27
Exon/intron offsets:
0
Genomic length:
323
Exon/intron sizes in nt:
323
Flanking exon/introns:
chr1:162508465-162508789
Splice length:
323
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAACATCCTGGTCCTGTAGTTCTTCATGCTTATGGCTTTTCTGTCTTGGGCTTTAGTGTTAGATTCACTTAAGTTAAAATCGGCTTTGAATTACCTTGAATAGGCTATTAACAAAACTTGGAGACATTTTTGATTCCCACATTACCAGAGTTTAGTATACCAGTGTAAGTCACAGGTTAAAAACAAAATTGGTTTTAAGGAGTTGCTGATCAATCTTACTTTTATGTCTGGAGTACTGTTTTATTTTCCCAGTCTTGTATTTTGTGTATATGAAGGTTGTGTCTATATATTACATGTGCATTTTCTTTTTATTGCATTGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAGTACTGTTTTATTTTCCCAGT
58.39
AGCCCAAGACAGAAAAGCCA
59.81
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAGTACTGTTTTATTTTCCCAGTC
59.29
AGCCCAAGACAGAAAAGCCA
59.81
147
PCR template sequence:
TTATGTCTGGAGTACTGTTTTATTTTCCCAGTCTTGTATTTTGTGTATATGAAGGTTGTGTCTATATATTACATGTGCATTTTCTTTTTATTGCATTGCAGTAAACATCCTGGTCCTGTAGTTCTTCATGCTTATGGCTTTTCTGTCTTGGGCTTTAGTGTTAGATTCACTTAAGTTAAAATCGGCTTTGAATTACCTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-101a-3p(1), mmu-miR-205-5p(1), mmu-miR-721(1)
siRNAs for circular RNA silencing
Junction sequence
TTATTGCATTGCAGTAAACATCCTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIPRRC2C_323_ORF_1
0.6646
-0.432022701
0.007544279
126
ORF sequence:
ATGAAGGTTGTGTCTATATATTACATGTGCATTTTCTTTTTATTGCATTGCAGTAAACATCCTGGTCCTGTAGTTCTTCATGCTTATGGCTTTTCTGTCTTGGGCTTTAGTGTTAGATTCACTTAA
Peptide sequence:
MKVVSIYYMCIFFLLHCSKHPGPVVLHAYGFSVLGFSVRFT
IRESfinder result
IRESfinder score
0.939661438
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page