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mmu_ciPrrc2c_315
Basic information of circular RNA
PanCircBase ID:
mmu_ciPrrc2c_315
mm39_Chr. Position ID:
chr1|162508474|162508789|-
Gene name:
Prrc2c
Transcript:
ENSMUST00000182149.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
27
Exon/intron offsets:
0
Genomic length:
315
Exon/intron sizes in nt:
315
Flanking exon/introns:
chr1:162508465-162508789
Splice length:
315
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAACATCCTGGTCCTGTAGTTCTTCATGCTTATGGCTTTTCTGTCTTGGGCTTTAGTGTTAGATTCACTTAAGTTAAAATCGGCTTTGAATTACCTTGAATAGGCTATTAACAAAACTTGGAGACATTTTTGATTCCCACATTACCAGAGTTTAGTATACCAGTGTAAGTCACAGGTTAAAAACAAAATTGGTTTTAAGGAGTTGCTGATCAATCTTACTTTTATGTCTGGAGTACTGTTTTATTTTCCCAGTCTTGTATTTTGTGTATATGAAGGTTGTGTCTATATATTACATGTGCATTTTCTTTTTATT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTGGAGTACTGTTTTATTTTCCCA
59.29
AGCCCAAGACAGAAAAGCCA
59.81
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCTGGAGTACTGTTTTATTTTCCC
59.29
AGCCCAAGACAGAAAAGCCA
59.81
143
PCR template sequence:
TCTTACTTTTATGTCTGGAGTACTGTTTTATTTTCCCAGTCTTGTATTTTGTGTATATGAAGGTTGTGTCTATATATTACATGTGCATTTTCTTTTTATTGTAAACATCCTGGTCCTGTAGTTCTTCATGCTTATGGCTTTTCTGTCTTGGGCTTTAGTGTTAGATTCACTTAAGTTAAAATCGGCTTTGAATTACCTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-101a-3p(1), mmu-miR-205-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTCTTTTTATTGTAAACATCCTGG
siRNA sets
GATGTTTACAATAAAAAGA, ATGTTTACAATAAAAAGAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIPRRC2C_315_ORF_1
0.8411
-0.560416559
0.005574511
111
ORF sequence:
ATGTCTGGAGTACTGTTTTATTTTCCCAGTCTTGTATTTTGTGTATATGAAGGTTGTGTCTATATATTACATGTGCATTTTCTTTTTATTGTAAACATCCTGGTCCTGTAG
Peptide sequence:
MSGVLFYFPSLVFCVYEGCVYILHVHFLFIVNILVL
IRESfinder result
IRESfinder score
0.938646121
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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